RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 CTF1Q16619 201 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 RNASE10Q5GAN6 216 aaKnown RBP12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 LHFPL1Q86WI0 220 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 TMEM230Q96A57 120 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 KLK11Q9UBX7 282 aa12.72□□□□□ -0.37
TSPAN3-208ENST00000560514 A0A1B0GU03 582 aa12.71□□□□□ -0.37
TSPAN3-208ENST00000560514 GABARAPO95166 117 aa12.71□□□□□ -0.37
TSPAN3-208ENST00000560514 TMEM50AO95807 157 aa12.71□□□□□ -0.37
TSPAN3-208ENST00000560514 ZFAND1Q8TCF1 268 aa12.71□□□□□ -0.37
TSPAN3-208ENST00000560514 DCANP1Q8TF63 244 aa12.71□□□□□ -0.37
TSPAN3-208ENST00000560514 NIPSNAP3BQ9BS92 247 aa12.71□□□□□ -0.37
TSPAN3-208ENST00000560514 SMIM9A6NGZ8 99 aa12.7□□□□□ -0.38
TSPAN3-208ENST00000560514 CRYBB3P26998 211 aa12.7□□□□□ -0.38
TSPAN3-208ENST00000560514 SNCAP37840 140 aa12.7□□□□□ -0.38
TSPAN3-208ENST00000560514 SNRPD3P62318 126 aaKnown RBP12.7□□□□□ -0.38
TSPAN3-208ENST00000560514 TMEM229BQ8NBD8 167 aa12.7□□□□□ -0.38
TSPAN3-208ENST00000560514 TERB2Q8NHR7 220 aa12.7□□□□□ -0.38
TSPAN3-208ENST00000560514 MRGPRFQ96AM1 343 aa12.7□□□□□ -0.38
TSPAN3-208ENST00000560514 ATG101Q9BSB4 218 aa12.7□□□□□ -0.38
TSPAN3-208ENST00000560514 IGHV3OR16-12A0A075B7B8 117 aa12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 M0QYG6 137 aa12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 CD3DP04234 171 aa12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 PGAM2P15259 253 aa12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 AP2S1P53680 142 aaPredicted RBP12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 SUB1P53999 127 aaKnown RBP eCLIP12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 PIGPP57054 158 aa12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 FAM3BP58499 235 aaPredicted RBP12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 SSBP1Q04837 148 aaKnown RBP12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 OR52I2Q8NH67 350 aa12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 ABHD1Q96SE0 405 aa12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 NEU1Q99519 415 aa12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 RFNGQ9Y644 331 aa12.69□□□□□ -0.38
TSPAN3-208ENST00000560514 A0A0B4J293 547 aa12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 C3orf85A0A1B0GTC6 90 aa12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 CORTO00230 105 aa12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 P0C879 139 aa12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 PPP5CP53041 499 aa12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 MRPS10P82664 201 aaKnown RBP12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 GPR107Q5VW38 600 aa12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 RABL2AQ9UBK7 228 aaPredicted RBP12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 EXTL2Q9UBQ6 330 aa12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 RABL2BQ9UNT1 228 aa12.68□□□□□ -0.38
TSPAN3-208ENST00000560514 TAS2R19P59542 299 aa12.67□□□□□ -0.38
TSPAN3-208ENST00000560514 FAM222AQ5U5X8 452 aa12.67□□□□□ -0.38
TSPAN3-208ENST00000560514 C6orf223Q8N319 242 aa12.67□□□□□ -0.38
TSPAN3-208ENST00000560514 CCDC71LQ8N9Z2 235 aa12.67□□□□□ -0.38
TSPAN3-208ENST00000560514 COPZ2Q9P299 210 aa12.67□□□□□ -0.38
TSPAN3-208ENST00000560514 DKK2Q9UBU2 259 aa12.67□□□□□ -0.38
TSPAN3-208ENST00000560514 LRP1BQ9NZR2 4599 aa12.67□□□□□ -0.38
TSPAN3-208ENST00000560514 H3BMM0 161 aa12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 GABARAPH6UMI1 98 aa12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 IGKV1-5P01602 117 aa12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 RPL5P46777 297 aaKnown RBP12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 SPINK9Q5DT21 86 aa12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 ZNF705AQ6ZN79 300 aaPredicted RBP12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 RRNAD1Q96FB5 475 aaKnown RBP12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 TP53RKQ96S44 253 aa12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 NAA50Q9GZZ1 169 aaKnown RBP12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 HERC1Q15751 4861 aa12.66□□□□□ -0.38
TSPAN3-208ENST00000560514 CLN5O75503 358 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 RAB3DO95716 219 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 SMIM18P0DKX4 95 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 PI3P19957 117 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 UCP1P25874 307 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 OPRK1P41145 380 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 AKR1C2P52895 323 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 AARDQ4LEZ3 155 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 STEAP1BQ6NZ63 245 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 TMEM88Q6PEY1 159 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 FAM219AQ8IW50 185 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 SLC35G3Q8N808 338 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 C15orf53Q8NAA6 179 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 PDCD10Q9BUL8 212 aa12.65□□□□□ -0.38
TSPAN3-208ENST00000560514 ZNF705FA8MVS1 300 aaPredicted RBP12.64□□□□□ -0.39
TSPAN3-208ENST00000560514 CDS2O95674 445 aa12.64□□□□□ -0.39
TSPAN3-208ENST00000560514 ZNF705DP0CH99 300 aaPredicted RBP12.64□□□□□ -0.39
TSPAN3-208ENST00000560514 ZNF705BP0CI00 300 aaPredicted RBP12.64□□□□□ -0.39
TSPAN3-208ENST00000560514 MEF2DQ14814 521 aa12.64□□□□□ -0.39
TSPAN3-208ENST00000560514 OXA1LQ15070 435 aa12.64□□□□□ -0.39
TSPAN3-208ENST00000560514 SURF2Q15527 256 aaPredicted RBP12.64□□□□□ -0.39
TSPAN3-208ENST00000560514 OR52E5Q8NH55 327 aa12.64□□□□□ -0.39
TSPAN3-208ENST00000560514 CACFD1Q9UGQ2 172 aa12.64□□□□□ -0.39
TSPAN3-208ENST00000560514 TRAV30A0A087WSZ9 112 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 NBDYA0A0U1RRE5 68 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 FAM90A26D6RGX4 464 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 HLA-DRB4P13762 266 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 ALDH3B2P48448 385 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 IZUMO4Q1ZYL8 232 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 TRIM16LQ309B1 348 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 GSG1LQ6UXU4 331 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 GPR141Q7Z602 305 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 OR13C8Q8NGS7 320 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 OR4X1Q8NH49 305 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 MRPS26Q9BYN8 205 aaKnown RBP12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 SEPSECSQ9HD40 501 aaKnown RBP12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 ENY2Q9NPA8 101 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 HLA-DRB4X5D2U9 266 aa12.63□□□□□ -0.39
TSPAN3-208ENST00000560514 CTDSPLO15194 276 aa12.62□□□□□ -0.39
TSPAN3-208ENST00000560514 IGKV3-20P01619 116 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms