RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TPPP2P59282 170 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 Q56UQ5 140 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 DEFB121Q5J5C9 76 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 BTNL8Q6UX41 500 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 HSD17B11Q8NBQ5 300 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 OR5AU1Q8NGC0 362 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 STOML3Q8TAV4 291 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 ST8SIA2Q92186 375 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 MS4A10Q96PG2 267 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 TXN2Q99757 166 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 PARD6GQ9BYG4 376 aaPredicted RBP9.17□□□□□ -0.94
LDLR-212ENST00000560467 C21orf62Q9NYP8 219 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 LINC00527Q9UJ94 153 aa9.17□□□□□ -0.94
LDLR-212ENST00000560467 IGLV11-55A0A075B6I3 123 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 TRBV7-1A0A0A6YYK4 115 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 PMS2P5A8MQ11 134 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 GNG7O60262 68 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 MBP02144 154 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 PF4P02776 101 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 S100A7P31151 101 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 HOXD3P31249 432 aaPredicted RBP9.16□□□□□ -0.94
LDLR-212ENST00000560467 CAMLGP49069 296 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 SELENOTP62341 195 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 RHOGP84095 191 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 ARL16Q0P5N6 197 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 GAMTQ14353 236 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 VWC2Q2TAL6 325 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 ASPHD1Q5U4P2 390 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 PVRIGQ6DKI7 326 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 TMEM144Q7Z5S9 345 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 S100A7AQ86SG5 101 aa9.16□□□□□ -0.94
LDLR-212ENST00000560467 NOL4LQ96MY1 436 aaPredicted RBP9.16□□□□□ -0.94
LDLR-212ENST00000560467 WDR61Q9GZS3 305 aaKnown RBP9.16□□□□□ -0.94
LDLR-212ENST00000560467 UMAD1C9J7I0 102 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 NUPL2O15504 423 aaKnown RBP9.15□□□□□ -0.94
LDLR-212ENST00000560467 CFDP00746 253 aaPredicted RBP9.15□□□□□ -0.94
LDLR-212ENST00000560467 PRH1P02810 166 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 ELANEP08246 267 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 SEC11BP0C7V7 166 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 RAB5CP51148 216 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 RND2P52198 227 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 SERF2P84101 59 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 NDUFA5Q16718 116 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 C15orf32Q32M92 178 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 AKR1C8PQ5T2L2 129 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 TEX261Q6UWH6 196 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 Q6ZRG5 221 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 ZNF767PQ75MW2 155 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 HAPLN4Q86UW8 402 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 TMEM116Q8NCL8 245 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 OR4X2Q8NGF9 303 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 OR2G3Q8NGZ4 309 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 OR4X1Q8NH49 305 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 LRRC20Q8TCA0 184 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 SCARB1Q8WTV0 552 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 TMEM170AQ8WVE7 144 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 NPIPB3Q92617 1050 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 BSCL2Q96G97 398 aaPredicted RBP9.15□□□□□ -0.94
LDLR-212ENST00000560467 GINS3Q9BRX5 216 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 WFDC1Q9HC57 220 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 CYTL1Q9NRR1 136 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 UBQLN2Q9UHD9 624 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 WDR83OSQ9Y284 106 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 TIMM9Q9Y5J7 89 aa9.15□□□□□ -0.94
LDLR-212ENST00000560467 TCRBV4S1A1TA0A5B7 111 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 I3L2K1 104 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 NDUFB8O95169 186 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 IGHG4P01861 327 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 OR10J1P30954 320 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 RAB2AP61019 212 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 FOXE3Q13461 319 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 KHDC1LQ5JSQ8 128 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 C10orf99Q6UWK7 81 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 RNF141Q8WVD5 230 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 RCC1LQ96I51 464 aaKnown RBP9.14□□□□□ -0.95
LDLR-212ENST00000560467 WWC2-AS2Q96NR7 200 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 FANCD2OSQ96PS1 177 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 ATP6V0BQ99437 205 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 PSMG3Q9BT73 122 aaPredicted RBP9.14□□□□□ -0.95
LDLR-212ENST00000560467 SLC25A32Q9H2D1 315 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 PFDN2Q9UHV9 154 aa9.14□□□□□ -0.95
LDLR-212ENST00000560467 TRBV9A0A0B4J1U6 114 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 IGHV3-21A0A0B4J1V1 117 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 PRSS46E5RG02 174 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 TEX46H3BTG2 121 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 CLN5O75503 358 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 IGLV1-40P01703 118 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 ATP6V0CP27449 155 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 RAB9AP51151 201 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 MFAP2P55001 183 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 ACOT6Q3I5F7 207 aaPredicted RBP9.13□□□□□ -0.95
LDLR-212ENST00000560467 SPSB3Q6PJ21 355 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 ZNF329Q86UD4 541 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 ZNF680Q8NEM1 530 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 BPIFCQ8NFQ6 507 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 Q8WTZ3 238 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 TMED6Q8WW62 240 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 NPCDR1Q9BY65 106 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 ARV1Q9H2C2 271 aa9.13□□□□□ -0.95
LDLR-212ENST00000560467 TSSC4Q9Y5U2 329 aaPredicted RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 163.6 ms