RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 NANPQ8TBE9 248 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 TMEM167AQ8TBQ9 72 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 LRRC20Q8TCA0 184 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 NRGNQ92686 78 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 PHYHIPLQ96FC7 376 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 UHRF2Q96PU4 802 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 RNF126Q9BV68 326 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 MRPL20Q9BYC9 149 aaKnown RBP4.06□□□□□ -1.76
LDLR-209ENST00000558528 ARL6Q9H0F7 186 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 MMP26Q9NRE1 261 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 LYRM2Q9NU23 88 aaPredicted RBP4.06□□□□□ -1.76
LDLR-209ENST00000558528 PSENENQ9NZ42 101 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 MBD2Q9UBB5 411 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 PEF1Q9UBV8 284 aaKnown RBP4.06□□□□□ -1.76
LDLR-209ENST00000558528 PITPNC1Q9UKF7 332 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 RCL1Q9Y2P8 373 aaKnown RBP4.06□□□□□ -1.76
LDLR-209ENST00000558528 SELENOKQ9Y6D0 94 aa4.06□□□□□ -1.76
LDLR-209ENST00000558528 HEATR1Q9H583 2144 aaKnown RBP4.06□□□□□ -1.76
LDLR-209ENST00000558528 TRRAPQ9Y4A5 3859 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 C15orf61A6NNL5 157 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 MPTX1A8MV57 137 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 INS-IGF2F8WCM5 200 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 RNASEK-C17orf49H0YIS7 233 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 SMLR1H3BR10 107 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 M0QZK8 103 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 CORTO00230 105 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 BCL2L11O43521 198 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 SSSCA1O60232 199 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 SAP30O75446 220 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 IFNA5P01569 189 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 FBP1P09467 338 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 TPT1P13693 172 aaKnown RBP4.05□□□□□ -1.76
LDLR-209ENST00000558528 SNCAP37840 140 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 HTR2BP41595 481 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 CDKN1BP46527 198 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 REG1BP48304 166 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 FHITP49789 147 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 SULT1A1P50225 295 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 CAV2P51636 162 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 PROK1P58294 105 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 BRWD1-AS2P59051 145 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 POLR2GP62487 172 aaKnown RBP eCLIP4.05□□□□□ -1.76
LDLR-209ENST00000558528 RPL8P62917 257 aaKnown RBP4.05□□□□□ -1.76
LDLR-209ENST00000558528 CD300CQ08708 224 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 PLGLAQ15195 96 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 NDUFA5Q16718 116 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 C6orf226Q5I0X4 101 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 FAM53AQ6NSI3 398 aaPredicted RBP4.05□□□□□ -1.76
LDLR-209ENST00000558528 ZNF562Q6V9R5 426 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 LCNL1Q6ZST4 164 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 SSX9Q7RTT3 188 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 C16orf82Q7Z2V1 217 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 PPP1R27Q86WC6 154 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 LINC00518Q8N0U6 118 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 C9orf62Q8N4C0 152 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 TMEM252Q8N6L7 170 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 WFDC11Q8NEX6 87 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 BPIFCQ8NFQ6 507 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 NPBQ8NG41 125 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 OR10P1Q8NGE3 313 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 OR1S2Q8NGQ3 325 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 DTD1Q8TEA8 209 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 TBX15Q96SF7 602 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 GGACTQ9BVM4 153 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 PLEKHA3Q9HB20 300 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 TMEM14BQ9NUH8 114 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 PAIP2BQ9ULR5 123 aaKnown RBP4.05□□□□□ -1.76
LDLR-209ENST00000558528 HILPDAQ9Y5L2 63 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 OR51B2Q9Y5P1 312 aa4.05□□□□□ -1.76
LDLR-209ENST00000558528 WNK1Q9H4A3 2382 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 IGLV5-45A0A087WSX0 123 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 A0A087WZ39 114 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 A0A0G2JRQ6 117 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 CENPVL3A0A0U1RRI6 287 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 BTBD17A6NE02 478 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 FNDC10F2Z333 226 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 G3V3Q6 166 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 NBR2O15453 112 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 NDUFA3O95167 84 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 VENTXO95231 258 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 IFNA10P01566 189 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 IGKV1D-33P01593 117 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 IGKV1-33P01594 117 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 IGKV1-16P04430 117 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 CRYGBP07316 175 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 PRSS2P07478 247 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 OR8U8P0C7N1 319 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 SAA1P0DJI8 122 aaPredicted RBP4.04□□□□□ -1.76
LDLR-209ENST00000558528 RAB5CP51148 216 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 PRCDQ00LT1 54 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 TMEM267Q0VDI3 215 aaPredicted RBP4.04□□□□□ -1.76
LDLR-209ENST00000558528 HES1Q14469 280 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 MMDQ15546 238 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 TMEM249Q2WGJ8 235 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 Q5BKY6 102 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 SPANXN5Q5MJ07 72 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 HCP5Q6MZN7 132 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 PRR26Q8N8Z3 221 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 UBAC2Q8NBM4 344 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 SCGB1C1Q8TD33 95 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms