RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 TFPI2P48307 235 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 CCL11P51671 97 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 ETFRF1Q6IPR1 90 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 PDPNQ86YL7 162 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 FDCSPQ8NFU4 85 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 FAM168AQ92567 244 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 C7orf69Q9H7B7 122 aa13.19□□□□□ -0.3
SHMT2-232ENST00000557487 TRAV5A0A0B4J249 113 aa13.18□□□□□ -0.3
SHMT2-232ENST00000557487 TOMM40O96008 361 aa13.18□□□□□ -0.3
SHMT2-232ENST00000557487 C8orf31Q8N9H6 132 aa13.18□□□□□ -0.3
SHMT2-232ENST00000557487 FLYWCH2Q96CP2 140 aaKnown RBP13.18□□□□□ -0.3
SHMT2-232ENST00000557487 FXYD5Q96DB9 178 aa13.18□□□□□ -0.3
SHMT2-232ENST00000557487 SSBP3Q9BWW4 388 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-232ENST00000557487 WNT10AQ9GZT5 417 aa13.18□□□□□ -0.3
SHMT2-232ENST00000557487 CEP295Q9C0D2 2601 aa13.18□□□□□ -0.3
SHMT2-232ENST00000557487 DSCAML1Q8TD84 2053 aa13.18□□□□□ -0.3
SHMT2-232ENST00000557487 NDUFB8O95169 186 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 CA1P00915 261 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-232ENST00000557487 COL8A2P25067 703 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 MLANAQ16655 118 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 ZNF738Q8NE65 137 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 OR10W1Q8NGF6 305 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 OR4C13Q8NGP0 309 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 OR2T6Q8NHC8 308 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 CHCHD1Q96BP2 118 aaKnown RBP13.17□□□□□ -0.3
SHMT2-232ENST00000557487 PERPQ96FX8 193 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 TANC2Q9HCD6 1990 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 ZNF492Q9P255 531 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 EPDR1Q9UM22 224 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 IGHV1-69-2A0A0G2JMI3 117 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 HIGD1CA8MV81 97 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 CRXO43186 299 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-232ENST00000557487 IGHV1-46P01743 117 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 HBBP68871 147 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 FAM201AQ5SY85 155 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 MORN5Q5VZ52 161 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 NHLRC2Q8NBF2 726 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 ZNF596Q8TC21 504 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 GPR82Q96P67 336 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 CCL13Q99616 98 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 MRPL20Q9BYC9 149 aaKnown RBP13.17□□□□□ -0.3
SHMT2-232ENST00000557487 GFRA4Q9GZZ7 299 aa13.17□□□□□ -0.3
SHMT2-232ENST00000557487 ACACBO00763 2458 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 FAM231BA6NCW3 169 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 C2orf70A6NJV1 201 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 A8MWL6 223 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 TCF21O43680 179 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 FSTL3O95633 263 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 REG1BP48304 166 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 GDF5OSQ5U4N7 250 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 ZCCHC24Q8N2G6 241 aaKnown RBP13.16□□□□□ -0.3
SHMT2-232ENST00000557487 RBMXL3Q8N7X1 1067 aaKnown RBP13.16□□□□□ -0.3
SHMT2-232ENST00000557487 TMEM70Q9BUB7 260 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 ST20Q9HBF5 79 aa13.16□□□□□ -0.3
SHMT2-232ENST00000557487 WDFY3Q8IZQ1 3526 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 PYYP10082 97 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 EBLN2Q6P2I7 272 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 RNASEKQ6P5S7 137 aaKnown RBP13.15□□□□□ -0.3
SHMT2-232ENST00000557487 PATE2Q6UY27 113 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 LINC00311Q8N616 119 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 FAM216BQ8N7L0 139 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 OR10X1Q8NGY0 326 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 FMC1Q96HJ9 113 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 LINC00479Q96M42 142 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 RPP21Q9H633 154 aaKnown RBP13.15□□□□□ -0.3
SHMT2-232ENST00000557487 COX11Q9Y6N1 276 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 IGKV1D-37A0A075B6S9 117 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 KLK10O43240 276 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 DUX4L9Q6RFH8 374 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-232ENST00000557487 MUC15Q8N387 334 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 NPIPB3Q92617 1050 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 TMEM186Q96B77 213 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 PRSS22Q9GZN4 317 aa13.15□□□□□ -0.3
SHMT2-232ENST00000557487 OR5AL1P0C617 328 aa13.14□□□□□ -0.31
SHMT2-232ENST00000557487 PTTG1IPP53801 180 aa13.14□□□□□ -0.31
SHMT2-232ENST00000557487 UCNP55089 124 aa13.14□□□□□ -0.31
SHMT2-232ENST00000557487 UBE2V1Q13404 147 aa13.14□□□□□ -0.31
SHMT2-232ENST00000557487 VHLLQ6RSH7 139 aa13.14□□□□□ -0.31
SHMT2-232ENST00000557487 SEM1Q6ZVN7 128 aa13.14□□□□□ -0.31
SHMT2-232ENST00000557487 MLST8Q9BVC4 326 aa13.14□□□□□ -0.31
SHMT2-232ENST00000557487 FNDC4Q9H6D8 234 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-232ENST00000557487 TPRP12270 2363 aaKnown RBP13.14□□□□□ -0.31
SHMT2-232ENST00000557487 CHD8Q9HCK8 2581 aa13.14□□□□□ -0.31
SHMT2-232ENST00000557487 IGLC7A0M8Q6 106 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 NKX2-8O15522 239 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 SLC25A5P05141 298 aaKnown RBP13.13□□□□□ -0.31
SHMT2-232ENST00000557487 TNFRSF1AP19438 455 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 Q56UQ5 140 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 LEMD1Q68G75 181 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 PVRIGQ6DKI7 326 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 LCN12Q6JVE5 192 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 LINC00305Q7Z4B0 112 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 C5orf17Q8NAS9 161 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 DEFB108BQ8NET1 73 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 C22orf15Q8WYQ4 148 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 RND1Q92730 232 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 TRGV9Q99603 122 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 WASHC3Q9Y3C0 194 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 APC2O95996 2303 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 TRAV34A0A0B4J273 112 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms