RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 OR52E5Q8NH55 327 aa6.94□□□□□ -1.3
SYNE2-224ENST00000557024 SRSF12Q8WXF0 261 aaKnown RBP6.94□□□□□ -1.3
SYNE2-224ENST00000557024 NMES1Q9C002 83 aa6.94□□□□□ -1.3
SYNE2-224ENST00000557024 ZNF436Q9C0F3 470 aaPredicted RBP6.94□□□□□ -1.3
SYNE2-224ENST00000557024 PLA2G2DQ9UNK4 145 aa6.94□□□□□ -1.3
SYNE2-224ENST00000557024 ZNF257Q9Y2Q1 563 aa6.94□□□□□ -1.3
SYNE2-224ENST00000557024 TEX50A0A1B0GTY4 177 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 A0A1B0GVY2 172 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 FAM90A26D6RGX4 464 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 BMPR1BO00238 502 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 SPRY2O43597 315 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 IL6RP08887 468 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-224ENST00000557024 PET100P0DJ07 73 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 CXCL3P19876 107 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 BMI1P35226 326 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 PJVKQ0ZLH3 352 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 DEFB135Q30KP9 77 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 SPINK9Q5DT21 86 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 AKAP14Q86UN6 197 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 OR4D5Q8NGN0 318 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 ASB13Q8WXK3 278 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 KRTAP9-2Q9BYQ4 174 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 HEYLQ9NQ87 328 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-224ENST00000557024 ZC4H2Q9NQZ6 224 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 TMEM14BQ9NUH8 114 aa6.93□□□□□ -1.3
SYNE2-224ENST00000557024 PAIP2BQ9ULR5 123 aaKnown RBP6.93□□□□□ -1.3
SYNE2-224ENST00000557024 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-224ENST00000557024 SYNGR2O43760 224 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 PITX3O75364 302 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 CCNKO75909 580 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 GIPP09681 153 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-224ENST00000557024 APELAP0DMC3 54 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 IAPPP10997 89 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 FOLR2P14207 255 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 MYOD1P15172 320 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 SUB1P53999 127 aaKnown RBP eCLIP6.92□□□□□ -1.3
SYNE2-224ENST00000557024 RAP2BP61225 183 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 RPP30P78346 268 aaKnown RBP6.92□□□□□ -1.3
SYNE2-224ENST00000557024 SSBP2P81877 361 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-224ENST00000557024 PRCDQ00LT1 54 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 FGL1Q08830 312 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 RAB32Q13637 225 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 C10orf55Q5SWW7 151 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 HSD17B13Q7Z5P4 300 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-224ENST00000557024 THAP6Q8TBB0 222 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 DTD1Q8TEA8 209 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 USMG5Q96IX5 58 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 TMEM68Q96MH6 324 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 CIB3Q96Q77 187 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-224ENST00000557024 MAGT1Q9H0U3 335 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 RBKSQ9H477 322 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 TP53TG1Q9Y2A0 90 aa6.92□□□□□ -1.3
SYNE2-224ENST00000557024 RCL1Q9Y2P8 373 aaKnown RBP6.92□□□□□ -1.3
SYNE2-224ENST00000557024 C2orf70A6NJV1 201 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 K7EPK0 472 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 CYB5BO43169 146 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 SSSCA1O60232 199 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 PFDN1O60925 122 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 IFNA10P01566 189 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 MBPP02686 304 aaPredicted RBP6.91□□□□□ -1.3
SYNE2-224ENST00000557024 OR13C7P0DN81 318 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 PSMB6P28072 239 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 NUP62P37198 522 aaPredicted RBP6.91□□□□□ -1.3
SYNE2-224ENST00000557024 SNCAP37840 140 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 H2BFSP57053 126 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 POLR2GP62487 172 aaKnown RBP eCLIP6.91□□□□□ -1.3
SYNE2-224ENST00000557024 LINC00336Q6ZUF6 198 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 Q6ZWC4 215 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 NOXA1Q86UR1 476 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 TMEM61Q8N0U2 210 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 TMEM217Q8N7C4 229 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 OR2T35Q8NGX2 323 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 PPP1R1CQ8WVI7 109 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 CACNG8Q8WXS5 425 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 RAB40CQ96S21 281 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 SRSF8Q9BRL6 282 aaKnown RBP6.91□□□□□ -1.3
SYNE2-224ENST00000557024 NDUFA4L2Q9NRX3 87 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 PSENENQ9NZ42 101 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 HSPB7Q9UBY9 170 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 VPS13DQ5THJ4 4388 aa6.91□□□□□ -1.3
SYNE2-224ENST00000557024 KRTAP9-6A0A140TA67 174 aa6.9□□□□□ -1.3
SYNE2-224ENST00000557024 SCAF4O95104 1147 aaKnown RBP6.9□□□□□ -1.3
SYNE2-224ENST00000557024 MPC2O95563 127 aa6.9□□□□□ -1.3
SYNE2-224ENST00000557024 DEFA4P12838 97 aa6.9□□□□□ -1.3
SYNE2-224ENST00000557024 RAB11AP62491 216 aa6.9□□□□□ -1.3
SYNE2-224ENST00000557024 EXOSC2Q13868 293 aaKnown RBP6.9□□□□□ -1.3
SYNE2-224ENST00000557024 MRGPRG-AS1Q2M3A8 158 aa6.9□□□□□ -1.3
SYNE2-224ENST00000557024 SPANXN5Q5MJ07 72 aa6.9□□□□□ -1.3
SYNE2-224ENST00000557024 C16orf92Q96LL3 132 aa6.9□□□□□ -1.3
SYNE2-224ENST00000557024 TECRQ9NZ01 308 aaKnown RBP6.9□□□□□ -1.3
SYNE2-224ENST00000557024 FBXL17Q9UF56 701 aa6.9□□□□□ -1.3
SYNE2-224ENST00000557024 U3KQ87 197 aa6.9□□□□□ -1.3
SYNE2-224ENST00000557024 FXYD6-FXYD2A0A087WZ82 144 aa6.89□□□□□ -1.31
SYNE2-224ENST00000557024 E5RGE8 158 aa6.89□□□□□ -1.31
SYNE2-224ENST00000557024 PPP5D1E7EU14 171 aa6.89□□□□□ -1.31
SYNE2-224ENST00000557024 E7EUB6 86 aa6.89□□□□□ -1.31
SYNE2-224ENST00000557024 PRH1P02810 166 aa6.89□□□□□ -1.31
SYNE2-224ENST00000557024 REG1AP05451 166 aa6.89□□□□□ -1.31
SYNE2-224ENST00000557024 HTR2BP41595 481 aa6.89□□□□□ -1.31
SYNE2-224ENST00000557024 CAV2P51636 162 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms