RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 PROB1E7EW31 1015 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 LINC00614P0C842 121 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 CFPP27918 469 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 EMP1P54849 157 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 NABP1Q96AH0 204 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 TRAV9-2A0A087WT02 112 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 SHISA3A0PJX4 238 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 RHODO00212 210 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 C5orf64Q2M2E5 130 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 MAJINQ3KP22 176 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 SPATA31B1PQ5VZV4 182 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 LYZL4Q96KX0 146 aa8.87□□□□□ -0.99
ACTN1-216ENST00000556083 CHTOPQ9Y3Y2 248 aaKnown RBP8.87□□□□□ -0.99
ACTN1-216ENST00000556083 BRCA1P38398 1863 aaKnown RBP8.86□□□□□ -0.99
ACTN1-216ENST00000556083 J3QLI3 93 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 OTX1P32242 354 aaPredicted RBP8.86□□□□□ -0.99
ACTN1-216ENST00000556083 ZNF138P52744 262 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 RNF126Q9BV68 326 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 FAM231BA6NCW3 169 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 LDLRAD4O15165 306 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 ATP5G3P48201 142 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 AGMATQ9BSE5 352 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 PRDM6Q9NQX0 595 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 ASXL3Q9C0F0 2248 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 PRTN3P24158 256 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 FOXA3P55318 350 aaPredicted RBP8.86□□□□□ -0.99
ACTN1-216ENST00000556083 ASCL4Q6XD76 172 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 VMO1Q7Z5L0 202 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 SEPSECSQ9HD40 501 aaKnown RBP8.86□□□□□ -0.99
ACTN1-216ENST00000556083 ARID2Q68CP9 1835 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 IGHV1-3A0A0C4DH29 117 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 TNFSF13O75888 250 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 TSPAN13O95857 204 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 MDKP21741 143 aaPredicted RBP8.86□□□□□ -0.99
ACTN1-216ENST00000556083 TMEM14EPQ6UXP3 125 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 NIT1Q86X76 327 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 C1QL4Q86Z23 238 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 LINC01356Q8N9X3 169 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 RASL10AQ92737 203 aa8.86□□□□□ -0.99
ACTN1-216ENST00000556083 F11RQ9Y624 299 aaKnown RBP8.86□□□□□ -0.99
ACTN1-216ENST00000556083 TRIOBPQ9H2D6 2365 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 ADARB2-AS1A8MUL3 147 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 VCYO14598 125 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 APOMO95445 188 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 CDKN1AP38936 164 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 NMSQ5H8A3 153 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 IGKV1D-13A0A0B4J2D9 117 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 GRIFINA4D1Z8 144 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 ETV2O00321 342 aaPredicted RBP8.85□□□□□ -0.99
ACTN1-216ENST00000556083 IGKV3-20P01619 116 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 CELA3BP08861 270 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 IGKV1-13P0DP09 117 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 IGFL3Q6UXB1 125 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 PHLDA1Q8WV24 401 aaPredicted RBP8.85□□□□□ -0.99
ACTN1-216ENST00000556083 CKAP5Q14008 2032 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 PGPEP1LA6NFU8 196 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 SUPT4H1P63272 117 aaKnown RBP8.85□□□□□ -0.99
ACTN1-216ENST00000556083 HSD52Q0P140 79 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 CT83Q5H943 113 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 GLRX5Q86SX6 157 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 GPHA2Q96T91 129 aa8.85□□□□□ -0.99
ACTN1-216ENST00000556083 H3BTX0 84 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 SRSF2Q01130 221 aaKnown RBP8.84□□□□□ -0.99
ACTN1-216ENST00000556083 SRSF4Q08170 494 aaKnown RBP8.84□□□□□ -0.99
ACTN1-216ENST00000556083 IL17RELQ6ZVW7 336 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 PAQR4Q8N4S7 273 aaPredicted RBP8.84□□□□□ -0.99
ACTN1-216ENST00000556083 MCRIP2Q9BUT9 160 aaKnown RBP8.84□□□□□ -0.99
ACTN1-216ENST00000556083 GFRA4Q9GZZ7 299 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 AKIRIN1Q9H9L7 192 aaPredicted RBP8.84□□□□□ -0.99
ACTN1-216ENST00000556083 PKIGQ9Y2B9 76 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 IGHV3OR16-10A0A075B7F0 116 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 A0A087WX48 190 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 A0A1B0GWB2 263 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 TREML4Q6UXN2 200 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 ZNF837Q96EG3 531 aaPredicted RBP8.84□□□□□ -0.99
ACTN1-216ENST00000556083 GGTLC1Q9BX51 225 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 DPH3P1Q9H4G8 78 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 NDUFS6O75380 124 aaKnown RBP8.84□□□□□ -0.99
ACTN1-216ENST00000556083 SNRPCP09234 159 aaKnown RBP8.84□□□□□ -0.99
ACTN1-216ENST00000556083 FAM90A2PQ658T7 463 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 COQ2Q96H96 371 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 MTCL1Q9Y4B5 1905 aaKnown RBP8.84□□□□□ -0.99
ACTN1-216ENST00000556083 TRAV40A0A0B4J280 105 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 TOMM40O96008 361 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 INSP01308 110 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 FOXF2Q12947 444 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 LAGE3Q14657 143 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 ATXN8Q156A1 80 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 C1orf194Q5T5A4 169 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 Q8TCH9 128 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 IFI27L1Q96BM0 104 aa8.84□□□□□ -0.99
ACTN1-216ENST00000556083 IGHV3-35A0A0C4DH35 117 aa8.83□□□□□ -1
ACTN1-216ENST00000556083 ZNF815PA8K554 130 aa8.83□□□□□ -1
ACTN1-216ENST00000556083 IGKCP01834 107 aa8.83□□□□□ -1
ACTN1-216ENST00000556083 CD28P10747 220 aa8.83□□□□□ -1
ACTN1-216ENST00000556083 GATA4P43694 442 aa8.83□□□□□ -1
ACTN1-216ENST00000556083 UNQ6494/PRO21346Q6UXR6 183 aa8.83□□□□□ -1
ACTN1-216ENST00000556083 MRPL27Q9P0M9 148 aaKnown RBP8.83□□□□□ -1
ACTN1-216ENST00000556083 IGKV3OR2-268A0A0C4DH90 116 aa8.83□□□□□ -1
ACTN1-216ENST00000556083 GGTLC3B5MD39 225 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms