RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 ERHP84090 104 aaKnown RBP10.87□□□□□ -0.67
SHMT2-217ENST00000555116 PDLIM3Q53GG5 364 aaPredicted RBP10.87□□□□□ -0.67
SHMT2-217ENST00000555116 PXDC1Q5TGL8 231 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 ACSM6Q6P461 480 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 CLEC19AQ6UXS0 136 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 RNF141Q8WVD5 230 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 BSCL2Q96G97 398 aaPredicted RBP10.87□□□□□ -0.67
SHMT2-217ENST00000555116 K7EIM0 57 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 JTBO76095 146 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 SYNJ2BPP57105 145 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 RPEL1Q2QD12 228 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 SMIM3Q9BZL3 60 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 ATF4P18848 351 aaPredicted RBP10.86□□□□□ -0.67
SHMT2-217ENST00000555116 POLR2GP62487 172 aaKnown RBP eCLIP10.86□□□□□ -0.67
SHMT2-217ENST00000555116 ID3Q02535 119 aa10.86□□□□□ -0.67
SHMT2-217ENST00000555116 PVRIGQ6DKI7 326 aa10.86□□□□□ -0.67
SHMT2-217ENST00000555116 EIF5AL1Q6IS14 154 aaKnown RBP10.86□□□□□ -0.67
SHMT2-217ENST00000555116 UBAC2Q8NBM4 344 aa10.86□□□□□ -0.67
SHMT2-217ENST00000555116 LINC00052Q96N35 136 aa10.86□□□□□ -0.67
SHMT2-217ENST00000555116 AURKAIP1Q9NWT8 199 aaPredicted RBP10.86□□□□□ -0.67
SHMT2-217ENST00000555116 IGHV3-21A0A0B4J1V1 117 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 A0A1B0GU03 582 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 TSPAN4O14817 238 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 GGCTO75223 188 aaKnown RBP10.85□□□□□ -0.67
SHMT2-217ENST00000555116 PITX3O75364 302 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 CLEC3BP05452 202 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 RNASE2P10153 161 aaKnown RBP10.85□□□□□ -0.67
SHMT2-217ENST00000555116 SLC25A6P12236 298 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 HOXA1P49639 335 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-217ENST00000555116 INSL3P51460 131 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 IL34Q6ZMJ4 242 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 OR1S2Q8NGQ3 325 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 MAGT1Q9H0U3 335 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 ARV1Q9H2C2 271 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 WFDC1Q9HC57 220 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 F8W735 103 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-217ENST00000555116 I3L2K1 104 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 SSSCA1O60232 199 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 PVALBP20472 110 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-217ENST00000555116 ARL3P36405 182 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 NHLH2Q02577 135 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 BSXQ3C1V8 233 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 OR9G4Q8NGQ1 327 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 MISP3Q96FF7 219 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 ENY2Q9NPA8 101 aa10.85□□□□□ -0.67
SHMT2-217ENST00000555116 SAP30O75446 220 aa10.84□□□□□ -0.67
SHMT2-217ENST00000555116 OR2C1O95371 312 aa10.84□□□□□ -0.67
SHMT2-217ENST00000555116 GPR183P32249 361 aa10.84□□□□□ -0.67
SHMT2-217ENST00000555116 EWSR1Q01844 656 aaKnown RBP eCLIP10.84□□□□□ -0.67
SHMT2-217ENST00000555116 REC114Q7Z4M0 266 aa10.84□□□□□ -0.67
SHMT2-217ENST00000555116 MARC2Q969Z3 335 aa10.84□□□□□ -0.67
SHMT2-217ENST00000555116 ATP6V0BQ99437 205 aa10.84□□□□□ -0.67
SHMT2-217ENST00000555116 ELOVL1Q9BW60 279 aa10.84□□□□□ -0.67
SHMT2-217ENST00000555116 C21orf62Q9NYP8 219 aa10.84□□□□□ -0.67
SHMT2-217ENST00000555116 HSPB7Q9UBY9 170 aa10.84□□□□□ -0.67
SHMT2-217ENST00000555116 FAM24AA6NFZ4 105 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 NXPH3O95157 252 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 TMEM50AO95807 157 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 SNCAP37840 140 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 TNFRSF9Q07011 255 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 GPHB5Q86YW7 130 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 IQCF2Q8IXL9 164 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 SAT2Q96F10 170 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-217ENST00000555116 LYRM2Q9NU23 88 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-217ENST00000555116 PLA2G2EQ9NZK7 142 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 CACFD1Q9UGQ2 172 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 BORCS7-ASMTA0A0B4J1R7 106 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 IGSF23A1L1A6 192 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 RAB19A4D1S5 217 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 CEBPZOSA8MTT3 80 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 ZNF705EA8MWA4 302 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-217ENST00000555116 TGOLN2O43493 480 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 MT-CO2P00403 227 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 CSN3P07498 182 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 SULT1A2P50226 295 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 CAV2P51636 162 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 VAMP2P63027 116 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 SMIM8Q96KF7 97 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 OR4C12Q96R67 309 aa10.83□□□□□ -0.68
SHMT2-217ENST00000555116 WI2-2373I1.2A0A1W2PRP0 233 aa10.82□□□□□ -0.68
SHMT2-217ENST00000555116 LGALS9O00182 355 aa10.82□□□□□ -0.68
SHMT2-217ENST00000555116 FCGR2BP31994 310 aaPredicted RBP10.82□□□□□ -0.68
SHMT2-217ENST00000555116 SUB1P53999 127 aaKnown RBP eCLIP10.82□□□□□ -0.682e-7■■■□□ 15.5
SHMT2-217ENST00000555116 PAX9P55771 341 aa10.82□□□□□ -0.68
SHMT2-217ENST00000555116 BTN1A1Q13410 526 aa10.82□□□□□ -0.68
SHMT2-217ENST00000555116 TMEM252Q8N6L7 170 aa10.82□□□□□ -0.68
SHMT2-217ENST00000555116 GINS3Q9BRX5 216 aa10.82□□□□□ -0.68
SHMT2-217ENST00000555116 SLC25A31Q9H0C2 315 aa10.82□□□□□ -0.68
SHMT2-217ENST00000555116 HEYLQ9NQ87 328 aaPredicted RBP10.82□□□□□ -0.68
SHMT2-217ENST00000555116 ZMAT5Q9UDW3 170 aaKnown RBP10.82□□□□□ -0.68
SHMT2-217ENST00000555116 OR2T8A6NH00 312 aa10.81□□□□□ -0.68
SHMT2-217ENST00000555116 K7EIL1 84 aa10.81□□□□□ -0.68
SHMT2-217ENST00000555116 WRBO00258 174 aa10.81□□□□□ -0.68
SHMT2-217ENST00000555116 IGHV3-48P01763 117 aa10.81□□□□□ -0.68
SHMT2-217ENST00000555116 ADMP35318 185 aa10.81□□□□□ -0.68
SHMT2-217ENST00000555116 ADAMTSL5Q6ZMM2 481 aa10.81□□□□□ -0.68
SHMT2-217ENST00000555116 TMEM170AQ8WVE7 144 aa10.81□□□□□ -0.68
SHMT2-217ENST00000555116 PINX1Q96BK5 328 aaKnown RBP10.81□□□□□ -0.68
SHMT2-217ENST00000555116 CHRDL1Q9BU40 450 aa10.81□□□□□ -0.68
SHMT2-217ENST00000555116 RBKSQ9H477 322 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms