RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RAB1BQ9H0U4 201 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 MPC1Q9Y5U8 109 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 LY96Q9Y6Y9 160 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 V9GYV3 84 aa6.25□□□□□ -1.41
LIMA1-216ENST00000552909 A0A096LNT2 108 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 FAM181BA6NEQ2 426 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 PMS2P5A8MQ11 134 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 C9JCJ5 164 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 BMPR1BO00238 502 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 SPINK4O60575 86 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 HSBP1O75506 76 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 NUDT3O95989 172 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 AMY1AP04745 511 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 BCL3P20749 454 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 COL8A2P25067 703 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 UBE2G1P62253 170 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 CCL8P80075 99 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 PSG9Q00887 426 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 ZNF585BQ52M93 769 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 SPRNQ5BIV9 151 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 OR5A2Q8NGI9 324 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 C10orf105Q8TEF2 133 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 FAM168AQ92567 244 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 FGF23Q9GZV9 251 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-216ENST00000552909 MS4A5Q9H3V2 200 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 PPP1R3CQ9UQK1 317 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 DOCK11Q5JSL3 2073 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 MUC21A0A0G2JKD1 596 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 IGHV3-64DA0A0J9YX35 117 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 MUC21A0A140T8X8 626 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 C17orf100A8MU93 164 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 IQCF6A8MYZ5 107 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 TIMM8AO60220 97 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-216ENST00000552909 OR7C2O60412 319 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 LY6G6DO95868 133 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 ARL14EPLP0DKL9 152 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 FGF12P61328 243 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 PAX2Q02962 417 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 GCSAMLQ5JQS6 135 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 MUC21Q5SSG8 566 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 MBNL2Q5VZF2 373 aaKnown RBP6.24□□□□□ -1.41
LIMA1-216ENST00000552909 TCF24Q7RTU0 167 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 FGFRL1Q8N441 504 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 OR8B3Q8NGG8 313 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 OR4S2Q8NH73 311 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 EAF1Q96JC9 268 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-216ENST00000552909 OR8B2Q96RD0 313 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 ST20Q9HBF5 79 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 PEF1Q9UBV8 284 aaKnown RBP6.24□□□□□ -1.41
LIMA1-216ENST00000552909 KCNS2Q9ULS6 477 aa6.24□□□□□ -1.41
LIMA1-216ENST00000552909 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.23□□□□□ -1.41
LIMA1-216ENST00000552909 M0R2Z0 102 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 SPRY3O43610 288 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 CD5LO43866 347 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 SAP30O75446 220 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 CXorf1O96002 111 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 IGLV2-14P01704 120 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 APCSP02743 223 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 EDDM3BP56851 147 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 RPS16P62249 146 aaKnown RBP6.23□□□□□ -1.41
LIMA1-216ENST00000552909 RPL31P62899 125 aaKnown RBP6.23□□□□□ -1.41
LIMA1-216ENST00000552909 KRTAP1-1Q07627 177 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 Q6ZR03 302 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 FER1L6-AS1Q8NA97 138 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 NEU4Q8WWR8 484 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-216ENST00000552909 IL1F10Q8WWZ1 152 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 ST6GALNAC6Q969X2 333 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 BPESC1Q9GZL8 116 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 HES4Q9HCC6 221 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 TRGV10A0A0A0MS01 117 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 VWC2LB2RUY7 222 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 G3V4G9 280 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 IGHV1-46P01743 117 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 OR10J4P0C629 311 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 IGLC1P0CG04 106 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 GNG3P63215 75 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 EBLN2Q6P2I7 272 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 SLC25A34Q6PIV7 304 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 C18orf32Q8TCD1 76 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 OR2D2Q9H210 308 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 OR1A1Q9P1Q5 309 aa6.23□□□□□ -1.41
LIMA1-216ENST00000552909 TRBV6-6A0A0A6YYG2 114 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 IGHV4-61A0A0C4DH41 118 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 GAGE10A6NGK3 116 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 GRPP07492 148 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 STAG3L2P0CL84 134 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 STAG3L3P0CL85 134 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 NPY1RP25929 384 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 CD1BP29016 333 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 DSCR9P59020 149 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 SLC35B1P78383 322 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 TNXAQ16473 311 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 SAMD13Q5VXD3 122 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 MRPL54Q6P161 138 aaKnown RBP6.22□□□□□ -1.41
LIMA1-216ENST00000552909 Q8N7P7 452 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 C11orf52Q96A22 123 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 CLUHP3Q96NS8 147 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 RTL8AQ9BWD3 113 aa6.22□□□□□ -1.41
LIMA1-216ENST00000552909 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-216ENST00000552909 WDR83OSQ9Y284 106 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms