RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 OR2T1O43869 369 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 IGKV2D-40P01614 121 aaPredicted RBP1.33□□□□□ -2.2
VPS29-205ENST00000548539 HOXA6P31267 233 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 BRS3P32247 399 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 SSR2P43308 183 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 TMED2Q15363 201 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 SPANXN5Q5MJ07 72 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 OR11H6Q8NGC7 330 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 ADAT3Q96EY9 351 aaPredicted RBP1.33□□□□□ -2.2
VPS29-205ENST00000548539 CEP19Q96LK0 163 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 HIST1H2BLQ99880 126 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 TAS2R4Q9NYW5 299 aa1.33□□□□□ -2.2
VPS29-205ENST00000548539 UTP11Q9Y3A2 253 aaKnown RBP1.33□□□□□ -2.2
VPS29-205ENST00000548539 SOX21Q9Y651 276 aaPredicted RBP1.33□□□□□ -2.2
VPS29-205ENST00000548539 FBN3Q75N90 2809 aa1.32□□□□□ -2.2
VPS29-205ENST00000548539 HEATR5AQ86XA9 2040 aa1.32□□□□□ -2.2
VPS29-205ENST00000548539 IGKV3-7A0A075B6H7 116 aa1.32□□□□□ -2.2
VPS29-205ENST00000548539 IGKV1-9A0A0C4DH69 117 aa1.32□□□□□ -2.2
VPS29-205ENST00000548539 HMGB3O15347 200 aaKnown RBP1.32□□□□□ -2.2
VPS29-205ENST00000548539 RNASE3P12724 160 aaKnown RBP1.32□□□□□ -2.2
VPS29-205ENST00000548539 HACD4Q5VWC8 232 aa1.32□□□□□ -2.2
VPS29-205ENST00000548539 PHF13Q86YI8 300 aaPredicted RBP1.32□□□□□ -2.2
VPS29-205ENST00000548539 FAM172AQ8WUF8 416 aa1.32□□□□□ -2.2
VPS29-205ENST00000548539 MED9Q9NWA0 146 aa1.32□□□□□ -2.2
VPS29-205ENST00000548539 EPDR1Q9UM22 224 aa1.32□□□□□ -2.2
VPS29-205ENST00000548539 PCF11O94913 1555 aaKnown RBP1.32□□□□□ -2.2
VPS29-205ENST00000548539 ZFHX2Q9C0A1 2572 aaPredicted RBP1.31□□□□□ -2.2
VPS29-205ENST00000548539 MYH11P35749 1972 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 C2orf70A6NJV1 201 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 SULT1B1O43704 296 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 OR2B3O76000 313 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 UBL3O95164 117 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 ANGP03950 147 aaKnown RBP1.31□□□□□ -2.2
VPS29-205ENST00000548539 ATP5G3P48201 142 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 PIGPP57054 158 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 BRMS1LQ5PSV4 323 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 LYRM7Q5U5X0 104 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 GOLT1AQ6ZVE7 132 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 C12orf29Q8N999 325 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 STAG3L4Q8TBR4 150 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 MIXL1Q9H2W2 232 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 PSTPIP2Q9H939 334 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 ARMC1Q9NVT9 282 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 SLC35A3Q9Y2D2 325 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 ADGRL3Q9HAR2 1447 aa1.31□□□□□ -2.2
VPS29-205ENST00000548539 STRCQ7RTU9 1775 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 TRAV4A0A0B4J268 109 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 J3QRK9 145 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 HCRTO43612 131 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 CST8O60676 142 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 CYBAP13498 195 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 MIFP14174 115 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 EIF5AP63241 154 aaKnown RBP1.3□□□□□ -2.2
VPS29-205ENST00000548539 TSNQ15631 228 aaKnown RBP1.3□□□□□ -2.2
VPS29-205ENST00000548539 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.3□□□□□ -2.2
VPS29-205ENST00000548539 CDC26Q8NHZ8 85 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 RETNLBQ9BQ08 111 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 TRABDQ9H4I3 376 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 PARVBQ9HBI1 364 aa1.3□□□□□ -2.2
VPS29-205ENST00000548539 C19orf84I3L1E1 186 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 OR1I1O60431 355 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 BAALC-AS2P0C853 105 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 SRP14P37108 136 aaKnown RBP1.29□□□□□ -2.2
VPS29-205ENST00000548539 CTAG1AP78358 180 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 PXT1Q8NFP0 134 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 SLAMF6Q96DU3 332 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 TMEM133Q9H2Q1 129 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 SNURFQ9Y675 71 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 ARL5AQ9Y689 179 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 MED1Q15648 1581 aaPredicted RBP1.29□□□□□ -2.2
VPS29-205ENST00000548539 ECM29Q5VYK3 1845 aa1.29□□□□□ -2.2
VPS29-205ENST00000548539 C7orf71A4D174 169 aa1.28□□□□□ -2.2
VPS29-205ENST00000548539 ZNF93P35789 620 aaPredicted RBP1.28□□□□□ -2.2
VPS29-205ENST00000548539 RHOGP84095 191 aa1.28□□□□□ -2.2
VPS29-205ENST00000548539 KRR1Q13601 381 aaKnown RBP1.28□□□□□ -2.2
VPS29-205ENST00000548539 ESRGQ1W209 222 aa1.28□□□□□ -2.2
VPS29-205ENST00000548539 DEFB113Q30KQ7 82 aa1.28□□□□□ -2.2
VPS29-205ENST00000548539 OR2T10Q8NGZ9 312 aa1.28□□□□□ -2.2
VPS29-205ENST00000548539 OR4C6Q8NH72 309 aa1.28□□□□□ -2.2
VPS29-205ENST00000548539 PRADC1Q9BSG0 188 aa1.28□□□□□ -2.2
VPS29-205ENST00000548539 BCL2L10Q9HD36 194 aa1.28□□□□□ -2.2
VPS29-205ENST00000548539 NHP2Q9NX24 153 aaKnown RBP1.28□□□□□ -2.2
VPS29-205ENST00000548539 MUC6Q6W4X9 2439 aa1.28□□□□□ -2.2
VPS29-205ENST00000548539 BAZ2BQ9UIF8 2168 aaKnown RBP1.27□□□□□ -2.21
VPS29-205ENST00000548539 SCN10AQ9Y5Y9 1956 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 ZNF106Q9H2Y7 1883 aaKnown RBP1.27□□□□□ -2.21
VPS29-205ENST00000548539 TRBV19A0A075B6N1 114 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 LYZL6O75951 148 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 PROSCO94903 275 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 RNASE4P34096 147 aaKnown RBP1.27□□□□□ -2.21
VPS29-205ENST00000548539 RAB4BP61018 213 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 HSPE1P61604 102 aaKnown RBP1.27□□□□□ -2.21
VPS29-205ENST00000548539 DYNLT1P63172 113 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 PDE6HQ13956 83 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 RRN3P1Q2M238 152 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 SLC30A7Q8NEW0 376 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 OR10J5Q8NHC4 309 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 SFT2D1Q8WV19 159 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 C6orf62Q9GZU0 229 aaPredicted RBP1.27□□□□□ -2.21
VPS29-205ENST00000548539 RNF122Q9H9V4 155 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms