RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 FAUP35544 74 aaKnown RBP9.27□□□□□ -0.93
USP28-212ENST00000544750 AP3S2P59780 193 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 HSPE1P61604 102 aaKnown RBP9.27□□□□□ -0.93
USP28-212ENST00000544750 LGALS9BQ3B8N2 356 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 AARDQ4LEZ3 155 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 SPINK9Q5DT21 86 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 ZNF114Q8NC26 417 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 DEDD2Q8WXF8 326 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 RBPMSQ93062 196 aaKnown RBP9.27□□□□□ -0.93
USP28-212ENST00000544750 TMEM56Q96MV1 263 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 TMEM56-RWDD3S4R434 201 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 X6R8D5 127 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 DFFBO76075 338 aa9.26□□□□□ -0.93
USP28-212ENST00000544750 MIFP14174 115 aa9.26□□□□□ -0.93
USP28-212ENST00000544750 DHODHQ02127 395 aa9.26□□□□□ -0.93
USP28-212ENST00000544750 ZNF575Q86XF7 245 aa9.26□□□□□ -0.93
USP28-212ENST00000544750 LILRB2Q8N423 598 aa9.26□□□□□ -0.93
USP28-212ENST00000544750 GBGT1Q8N5D6 347 aa9.26□□□□□ -0.93
USP28-212ENST00000544750 FAM24BQ8N5W8 94 aa9.26□□□□□ -0.93
USP28-212ENST00000544750 OR1P1Q8NH06 330 aa9.26□□□□□ -0.93
USP28-212ENST00000544750 APOBP04114 4563 aaKnown RBP9.26□□□□□ -0.93
USP28-212ENST00000544750 IGHV3OR16-13A0A075B7E8 117 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 IGHV3-74A0A0B4J1X5 117 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 A6NHS1 94 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 INS-IGF2F8WCM5 200 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 M0R2N4 97 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 ATG12O94817 140 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 AKR1C4P17516 323 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 DEFB131AP59861 70 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 Q56UQ5 140 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 TMEM268Q5VZI3 342 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 LEMD1Q68G75 181 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 TCF24Q7RTU0 167 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 FAM219AQ8IW50 185 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 UBAC2Q8NBM4 344 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 GPR146Q96CH1 333 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 SCGB3A2Q96PL1 93 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 VSIRQ9H7M9 311 aa9.25□□□□□ -0.93
USP28-212ENST00000544750 TRAV14DV4A0A0A6YYC5 116 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 TRAV2A0A0B4J234 112 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 I3L2K1 104 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 NUPL2O15504 423 aaKnown RBP9.24□□□□□ -0.93
USP28-212ENST00000544750 P0DMU3 169 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 FAM231AP0DMU4 169 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 FAM231CP0DMU5 169 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 BTCP35070 178 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 RELQ04864 619 aaPredicted RBP9.24□□□□□ -0.93
USP28-212ENST00000544750 C12orf74Q32Q52 190 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 Q6ZR54 194 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 TRPT1Q86TN4 253 aaKnown RBP9.24□□□□□ -0.93
USP28-212ENST00000544750 SLC35G3Q8N808 338 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 CSNK1G2-AS1Q8NCQ2 148 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 IL22RA2Q969J5 263 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 RRNAD1Q96FB5 475 aaKnown RBP9.24□□□□□ -0.93
USP28-212ENST00000544750 SCRT1Q9BWW7 348 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 MS4A6AQ9H2W1 248 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 CACNG5Q9UF02 275 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 CELA1Q9UNI1 258 aa9.24□□□□□ -0.93
USP28-212ENST00000544750 APOHP02749 345 aaPredicted RBP9.23□□□□□ -0.93
USP28-212ENST00000544750 CD5P06127 495 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 RNASE2P10153 161 aaKnown RBP9.23□□□□□ -0.93
USP28-212ENST00000544750 IL7P13232 177 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 C4BPBP20851 252 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 CCR6P51684 374 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 PAFAH1B2P68402 229 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 BSXQ3C1V8 233 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 TMEM41BQ5BJD5 291 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 NMSQ5H8A3 153 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 TMED4Q7Z7H5 227 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 RNASE11Q8TAA1 199 aaKnown RBP9.23□□□□□ -0.93
USP28-212ENST00000544750 ST8SIA2Q92186 375 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 SLC25A21Q9BQT8 299 aaPredicted RBP9.23□□□□□ -0.93
USP28-212ENST00000544750 KCNIP3Q9Y2W7 256 aa9.23□□□□□ -0.93
USP28-212ENST00000544750 HERC1Q15751 4861 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 DNAH5Q8TE73 4624 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 DEFB131BA0A096LNP1 70 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 IFNA17P01571 189 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 SPCS3P61009 180 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 CNPY1Q3B7I2 92 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 TMEM128Q5BJH2 165 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 TRIQKQ629K1 86 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 LYZL2Q7Z4W2 148 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 STHQ8IWL8 128 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 OR52E5Q8NH55 327 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 MISP3Q96FF7 219 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 TXN2Q99757 166 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.22□□□□□ -0.93
USP28-212ENST00000544750 PLA2G2EQ9NZK7 142 aa9.22□□□□□ -0.93
USP28-212ENST00000544750 A0A0B4J2A0 478 aa9.21□□□□□ -0.94
USP28-212ENST00000544750 YIF1AO95070 293 aa9.21□□□□□ -0.94
USP28-212ENST00000544750 NDUFB6O95139 128 aa9.21□□□□□ -0.94
USP28-212ENST00000544750 MT-CO2P00403 227 aa9.21□□□□□ -0.94
USP28-212ENST00000544750 IGHV3-48P01763 117 aa9.21□□□□□ -0.94
USP28-212ENST00000544750 SPP1P10451 314 aa9.21□□□□□ -0.94
USP28-212ENST00000544750 HOXA1P49639 335 aaPredicted RBP9.21□□□□□ -0.94
USP28-212ENST00000544750 MFAP4P55083 255 aa9.21□□□□□ -0.94
USP28-212ENST00000544750 ERHP84090 104 aaKnown RBP9.21□□□□□ -0.94
USP28-212ENST00000544750 PPP1R1AQ13522 171 aa9.21□□□□□ -0.94
USP28-212ENST00000544750 MORN3Q6PF18 240 aaPredicted RBP9.21□□□□□ -0.94
USP28-212ENST00000544750 TOMM20LQ6UXN7 152 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms