RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 DOCK11Q5JSL3 2073 aa6.63□□□□□ -1.35
CHD4-208ENST00000540960 SLC16A13Q7RTY0 426 aa6.63□□□□□ -1.35
CHD4-208ENST00000540960 STXBP6Q8NFX7 210 aa6.63□□□□□ -1.35
CHD4-208ENST00000540960 OR1L4Q8NGR5 311 aa6.63□□□□□ -1.35
CHD4-208ENST00000540960 RCC1LQ96I51 464 aaKnown RBP6.63□□□□□ -1.35
CHD4-208ENST00000540960 B9D2Q9BPU9 175 aa6.63□□□□□ -1.35
CHD4-208ENST00000540960 RSG1Q9BU20 258 aa6.63□□□□□ -1.35
CHD4-208ENST00000540960 SIRT7Q9NRC8 400 aa6.63□□□□□ -1.35
CHD4-208ENST00000540960 LSM4Q9Y4Z0 139 aaKnown RBP6.63□□□□□ -1.35
CHD4-208ENST00000540960 PXMP4Q9Y6I8 212 aa6.63□□□□□ -1.35
CHD4-208ENST00000540960 ARL2-SNX15V9GYD0 113 aa6.63□□□□□ -1.35
CHD4-208ENST00000540960 TRAV30A0A087WSZ9 112 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 ELOA3CA0A087WX78 387 aaPredicted RBP6.62□□□□□ -1.35
CHD4-208ENST00000540960 PRSS46E5RG02 174 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 AGPAT2O15120 278 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 NPFFO15130 113 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 HOXA3O43365 443 aaPredicted RBP6.62□□□□□ -1.35
CHD4-208ENST00000540960 CLN5O75503 358 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 CXorf1O96002 111 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 SFTA3P0C7M3 94 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 BCL2P10415 239 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 HIST1H1BP16401 226 aaKnown RBP6.62□□□□□ -1.35
CHD4-208ENST00000540960 CDC34P49427 236 aaPredicted RBP6.62□□□□□ -1.35
CHD4-208ENST00000540960 PNRC1Q12796 327 aaPredicted RBP6.62□□□□□ -1.35
CHD4-208ENST00000540960 C5orf64Q2M2E5 130 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 SPINK9Q5DT21 86 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 UTF1Q5T230 341 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 PVRIGQ6DKI7 326 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 ZNF562Q6V9R5 426 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 ADAMTSL5Q6ZMM2 481 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 SLC35E3Q7Z769 313 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 GATAD1Q8WUU5 269 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 EAF1Q96JC9 268 aaPredicted RBP6.62□□□□□ -1.35
CHD4-208ENST00000540960 LINC00052Q96N35 136 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 MRPL32Q9BYC8 188 aaKnown RBP6.62□□□□□ -1.35
CHD4-208ENST00000540960 NKX6-2Q9C056 277 aaPredicted RBP6.62□□□□□ -1.35
CHD4-208ENST00000540960 SLC45A2Q9UMX9 530 aa6.62□□□□□ -1.35
CHD4-208ENST00000540960 IGHV3OR16-10A0A075B7F0 116 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 B4DEV8 164 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 TMEM250H0YL14 139 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 PDE6DO43924 150 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 IGKV1D-33P01593 117 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 IGKV1-33P01594 117 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 DEFA4P12838 97 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 TMEM11P17152 192 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 ELLP55199 621 aaPredicted RBP6.61□□□□□ -1.35
CHD4-208ENST00000540960 B2MP61769 119 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 RHEBQ15382 184 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 SPSB3Q6PJ21 355 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 ABHD5Q8WTS1 349 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 SRSF12Q8WXF0 261 aaKnown RBP6.61□□□□□ -1.35
CHD4-208ENST00000540960 CFHR4Q92496 578 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 RASL11BQ9BPW5 248 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 NIPSNAP3BQ9BS92 247 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 GGTLC1Q9BX51 225 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 KRTAP3-3Q9BYR6 98 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 KRTAP3-2Q9BYR7 98 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 TMEM167BQ9NRX6 74 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 TECRQ9NZ01 308 aaKnown RBP6.61□□□□□ -1.35
CHD4-208ENST00000540960 ZNRD1Q9P1U0 126 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 GNG13Q9P2W3 67 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 PITPNC1Q9UKF7 332 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 FAM96BQ9Y3D0 163 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 HILPDAQ9Y5L2 63 aa6.61□□□□□ -1.35
CHD4-208ENST00000540960 F11RQ9Y624 299 aaKnown RBP6.61□□□□□ -1.35
CHD4-208ENST00000540960 DNAH7Q8WXX0 4024 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 IGHV3-72A0A0B4J1Y9 119 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 IGHV1-69DA0A0B4J2H0 117 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 LOC102723971A0A1B0GUV8 181 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 IGLC7A0M8Q6 106 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 NPIPB5A8MRT5 1133 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 F6UZH7 168 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 IGHV1-69P01742 117 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 CRYBA1P05813 215 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 NPBWR1P48145 328 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 FHITP49789 147 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 GNB1P62873 340 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 DIAPH2-AS1Q14236 149 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 GAMTQ14353 236 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 FXYD3Q14802 87 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 ARSJQ5FYB0 599 aaPredicted RBP6.6□□□□□ -1.35
CHD4-208ENST00000540960 HCP5Q6MZN7 132 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 FAM122CQ6P4D5 195 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 LCN15Q6UWW0 184 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 PQLC2Q6ZP29 291 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 C16orf82Q7Z2V1 217 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 RPP25LQ8N5L8 163 aaKnown RBP6.6□□□□□ -1.35
CHD4-208ENST00000540960 THAP8Q8NA92 274 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 TMEM116Q8NCL8 245 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 RAB24Q969Q5 203 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 RPUSD4Q96CM3 377 aaKnown RBP6.6□□□□□ -1.35
CHD4-208ENST00000540960 UHRF2Q96PU4 802 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 TRGV9Q99603 122 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 TCEAL7Q9BRU2 100 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 PLA2G2EQ9NZK7 142 aa6.6□□□□□ -1.35
CHD4-208ENST00000540960 TCRBV4S1A1TA0A5B7 111 aa6.59□□□□□ -1.35
CHD4-208ENST00000540960 ZFP92A6NM28 416 aa6.59□□□□□ -1.35
CHD4-208ENST00000540960 NCBP2LA6PVI3 153 aaKnown RBP6.59□□□□□ -1.35
CHD4-208ENST00000540960 HLA-DRB1P01911 266 aa6.59□□□□□ -1.35
CHD4-208ENST00000540960 CRYGCP07315 174 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms