RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 FLVCR2Q9UPI3 526 aa10.55□□□□□ -0.72
USP28-209ENST00000540925 TRAV30A0A087WSZ9 112 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 IGHV3-49A0A0A0MS15 119 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 C9orf170A2RU37 121 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 OR4C46A6NHA9 309 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 CRYBB3P26998 211 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 RND2P52198 227 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 YPEL3P61236 119 aaPredicted RBP10.54□□□□□ -0.72
USP28-209ENST00000540925 DHRS2Q13268 280 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 OR1S2Q8NGQ3 325 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 OR1S1Q8NH92 325 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 U3KQE9 123 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 DNAH1Q9P2D7 4330 aa10.54□□□□□ -0.72
USP28-209ENST00000540925 RYR2Q92736 4967 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 IGHV3OR16-13A0A075B7E8 117 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 IGHV3-74A0A0B4J1X5 117 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 A6NHS1 94 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 C3orf84H3BNL1 204 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 IFNA10P01566 189 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 CD5P06127 495 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 OR4E1P0C645 316 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 INPP1P49441 399 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 GGNBP1Q5YKI7 109 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 ETFRF1Q6IPR1 90 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 RETNQ9HD89 108 aa10.53□□□□□ -0.72
USP28-209ENST00000540925 PLECQ15149 4684 aaKnown RBP10.52□□□□□ -0.73
USP28-209ENST00000540925 LINC00854A0A1B0GVQ3 168 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 PRSS46E5RG02 174 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 HOXB5P09067 269 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 OR10J1P30954 320 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 GPX4P36969 197 aaPredicted RBP10.52□□□□□ -0.73
USP28-209ENST00000540925 TCF24Q7RTU0 167 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 LYG2Q86SG7 212 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 MUC7Q8TAX7 377 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 NPIPB3Q92617 1050 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 GGTLC1Q9BX51 225 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 UBQLN2Q9UHD9 624 aa10.52□□□□□ -0.73
USP28-209ENST00000540925 IGKV1D-37A0A075B6S9 117 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 LOC102724200A0A096LPH7 203 aaPredicted RBP10.51□□□□□ -0.73
USP28-209ENST00000540925 TRAV2A0A0B4J234 112 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 CENPXA8MT69 81 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 MPTX1A8MV57 137 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 SCGB2A1O75556 95 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 ADAP1O75689 374 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 DFFBO76075 338 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 ANXA7P20073 488 aaKnown RBP10.51□□□□□ -0.73
USP28-209ENST00000540925 NPPCP23582 126 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 BMI1P35226 326 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 CNPY1Q3B7I2 92 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 CCDC32Q9BV29 185 aa10.51□□□□□ -0.73
USP28-209ENST00000540925 IGHV3-66A0A0C4DH42 116 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 LYRM1O43325 122 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 SYNGR2O43760 224 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 TOMM40O96008 361 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 ID3Q02535 119 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 GAMTQ14353 236 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 USF2Q15853 346 aaPredicted RBP10.5□□□□□ -0.73
USP28-209ENST00000540925 OR4D5Q8NGN0 318 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 ACY3Q96HD9 319 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 METTL26Q96S19 204 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 MS4A6AQ9H2W1 248 aa10.5□□□□□ -0.73
USP28-209ENST00000540925 KIR2DL5BA0A0G2JN68 375 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 KIR2DL5BA0A0G2JPC4 375 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 MED6O75586 246 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 IAPPP10997 89 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 CASC10Q5T4H9 136 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 KIR2DL5AQ8N109 375 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 KIR2DL5BQ8NHK3 375 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 Q8WTZ3 238 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 MITD1Q8WV92 249 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 CIB3Q96Q77 187 aaPredicted RBP10.49□□□□□ -0.73
USP28-209ENST00000540925 OVOL2Q9BRP0 275 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 MAGT1Q9H0U3 335 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 C20orf85Q9H1P6 137 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 TMEM231Q9H6L2 316 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 MAP6D1Q9H9H5 199 aa10.49□□□□□ -0.73
USP28-209ENST00000540925 IGKV1OR2-108A0A075B7D4 117 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 A0A1W2PS18 150 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 IFNA4P05014 189 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 PSG1P11464 419 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 P2RY1P47900 373 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 ZNF124Q15973 351 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 C16orf54Q6UWD8 224 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 APRG1Q8IVJ8 170 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 GBGT1Q8N5D6 347 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 FAM24BQ8N5W8 94 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 COQ8AQ8NI60 647 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 GLMPQ8WWB7 406 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 TENM2Q9NT68 2774 aa10.48□□□□□ -0.73
USP28-209ENST00000540925 IGKV3-7A0A075B6H7 116 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 K7EQG2 157 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 TCRBP04435 133 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 IL4P05112 153 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 HNRNPCP07910 306 aaKnown RBP eCLIP10.47□□□□□ -0.73
USP28-209ENST00000540925 RD3LP0DJH9 198 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 TFPI2P48307 235 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 CMC4P56277 68 aaPredicted RBP10.47□□□□□ -0.73
USP28-209ENST00000540925 RAB11AP62491 216 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 PAFAH1B2P68402 229 aa10.47□□□□□ -0.73
USP28-209ENST00000540925 C4orf46Q504U0 113 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms