RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 OR11H12B2RN74 326 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 SGK494Q96LW2 274 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 IFT22Q9H7X7 185 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 UBE2DNLQ8IWF7 75 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 M0R381 172 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 ERVK11-1P61568 191 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 PMS2P11Q13670 270 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 TEX36Q5VZQ5 186 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 OR8A1Q8NGG7 326 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 TRAV21A0A0B4J279 112 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 RCC1LQ96I51 464 aaKnown RBP11.64□□□□□ -0.55
COLCA1-204ENST00000540738 CREBBPQ92793 2442 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 C5orf63A6NC05 138 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 ASCL4Q6XD76 172 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 NIT2Q9NQR4 276 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 ZNF324O75467 553 aaPredicted RBP11.63□□□□□ -0.55
COLCA1-204ENST00000540738 CGAP01215 116 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 Q6AWC8 147 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 Q6ZS49 121 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 DOPEY2Q9Y3R5 2298 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 CENPWQ5EE01 88 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 C10orf55Q5SWW7 151 aa11.63□□□□□ -0.55
COLCA1-204ENST00000540738 ATG101Q9BSB4 218 aa11.62□□□□□ -0.55
COLCA1-204ENST00000540738 F11RQ9Y624 299 aaKnown RBP11.62□□□□□ -0.55
COLCA1-204ENST00000540738 FABP5P3A8MUU1 101 aa11.62□□□□□ -0.55
COLCA1-204ENST00000540738 HNRNPA3P51991 378 aaKnown RBP11.62□□□□□ -0.55
COLCA1-204ENST00000540738 SOD3P08294 240 aa11.62□□□□□ -0.55
COLCA1-204ENST00000540738 GATA2P23769 480 aaPredicted RBP11.62□□□□□ -0.55
COLCA1-204ENST00000540738 TMEM183BQ1AE95 376 aa11.62□□□□□ -0.55
COLCA1-204ENST00000540738 OR1N2Q8NGR9 330 aa11.62□□□□□ -0.55
COLCA1-204ENST00000540738 GEMIN7Q9H840 131 aaKnown RBP11.62□□□□□ -0.55
COLCA1-204ENST00000540738 SHISA9B4DS77 424 aa11.62□□□□□ -0.55
COLCA1-204ENST00000540738 M0R3E3 92 aa11.62□□□□□ -0.55
COLCA1-204ENST00000540738 ZNF562Q6V9R5 426 aa11.62□□□□□ -0.55
COLCA1-204ENST00000540738 TRGV4A0A0C4DH28 118 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 CD7P09564 240 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 LMO1P25800 156 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 Q6ZR03 302 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 MIR17HGQ75NE6 70 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 LRTM2Q8N967 370 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 OR10W1Q8NGF6 305 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 VENTXO95231 258 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 VOPP1Q96AW1 172 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 ZGRF1Q86YA3 2104 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 HELZP42694 1942 aaKnown RBP11.61□□□□□ -0.55
COLCA1-204ENST00000540738 TRBV20OR9-2A0A075B6H5 130 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 TAS2R60P59551 318 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 ADORA2A-AS1P86434 159 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 DOCK7Q96N67 2140 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 IGKV1D-8A0A087WSZ0 117 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 LDLRAD4O15165 306 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 ID3Q02535 119 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 LCN12Q6JVE5 192 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 C9orf139Q6ZV77 190 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 ZNF383Q8NA42 475 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 OR5AN1Q8NGI8 311 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 KAAG1Q9UBP8 84 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 NR2C2APQ86WQ0 139 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 COPS9Q8WXC6 57 aa11.61□□□□□ -0.55
COLCA1-204ENST00000540738 IGKV3OR2-268A0A0C4DH90 116 aa11.6□□□□□ -0.55
COLCA1-204ENST00000540738 GRNP28799 593 aaKnown RBP11.6□□□□□ -0.55
COLCA1-204ENST00000540738 SRSF9Q13242 221 aaKnown RBP eCLIP11.6□□□□□ -0.55
COLCA1-204ENST00000540738 LOXP28300 417 aaPredicted RBP11.6□□□□□ -0.55
COLCA1-204ENST00000540738 PARLQ9H300 379 aa11.6□□□□□ -0.55
COLCA1-204ENST00000540738 C1orf122Q6ZSJ8 110 aa11.6□□□□□ -0.55
COLCA1-204ENST00000540738 NOTCH2Q04721 2471 aa11.6□□□□□ -0.55
COLCA1-204ENST00000540738 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.6□□□□□ -0.55
COLCA1-204ENST00000540738 MPDZO75970 2070 aa11.6□□□□□ -0.55
COLCA1-204ENST00000540738 A0A1B0GUS0 222 aa11.6□□□□□ -0.55
COLCA1-204ENST00000540738 A0A1B0GW15 77 aa11.6□□□□□ -0.55
COLCA1-204ENST00000540738 LINC01619G3V211 115 aa11.6□□□□□ -0.55
COLCA1-204ENST00000540738 GLMPQ8WWB7 406 aa11.6□□□□□ -0.55
COLCA1-204ENST00000540738 A0A1W2PNU3 283 aaPredicted RBP11.59□□□□□ -0.55
COLCA1-204ENST00000540738 ZNF502Q8TBZ5 544 aa11.59□□□□□ -0.55
COLCA1-204ENST00000540738 GFI1Q99684 422 aa11.59□□□□□ -0.55
COLCA1-204ENST00000540738 DAZ1Q9NQZ3 744 aaKnown RBP11.59□□□□□ -0.55
COLCA1-204ENST00000540738 ZFP30Q9Y2G7 519 aa11.59□□□□□ -0.55
COLCA1-204ENST00000540738 FAM110DQ8TAY7 271 aaPredicted RBP11.59□□□□□ -0.55
COLCA1-204ENST00000540738 TRGV9Q99603 122 aa11.59□□□□□ -0.55
COLCA1-204ENST00000540738 IGHV2-5P01817 119 aa11.59□□□□□ -0.55
COLCA1-204ENST00000540738 ISOC2Q96AB3 205 aa11.58□□□□□ -0.55
COLCA1-204ENST00000540738 WDR83OSQ9Y284 106 aa11.58□□□□□ -0.55
COLCA1-204ENST00000540738 TRAV34A0A0B4J273 112 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 LINC00862A6NCI5 91 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 PHOX2AO14813 284 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 FHL1Q13642 323 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 FGF16O43320 207 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 WNK2Q9Y3S1 2297 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 HBBP68871 147 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 CIRBPQ14011 172 aaKnown RBP11.58□□□□□ -0.56
COLCA1-204ENST00000540738 LINC00311Q8N616 119 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 PRSS2P07478 247 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 TDGF1P3P51864 188 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 REC114Q7Z4M0 266 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 PRDM13Q9H4Q3 707 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 SOX21Q9Y651 276 aaPredicted RBP11.58□□□□□ -0.56
COLCA1-204ENST00000540738 FER1L5A0AVI2 2057 aa11.58□□□□□ -0.56
COLCA1-204ENST00000540738 TRBV9A0A0B4J1U6 114 aa11.57□□□□□ -0.56
COLCA1-204ENST00000540738 TMEM249Q2WGJ8 235 aa11.57□□□□□ -0.56
COLCA1-204ENST00000540738 FER1L6-AS1Q8NA97 138 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms