RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 ARL17AQ8IVW1 177 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 SIP14410 1827 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 PLXNA3P51805 1871 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 A0A087WX48 190 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 C18orf15Q96N68 181 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 F11RQ9Y624 299 aaKnown RBP7.77□□□□□ -1.17
PTPRB-204ENST00000538708 RBMY1BA6NDE4 496 aaKnown RBP7.77□□□□□ -1.17
PTPRB-204ENST00000538708 RBMY1EA6NEQ0 496 aaKnown RBP7.77□□□□□ -1.17
PTPRB-204ENST00000538708 TMEM250H0YL14 139 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 RBMY1DP0C7P1 496 aaKnown RBP7.77□□□□□ -1.17
PTPRB-204ENST00000538708 DANCRP0C864 163 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 RBMY1A1P0DJD3 496 aaKnown RBP7.77□□□□□ -1.17
PTPRB-204ENST00000538708 RBMY1CP0DJD4 496 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 C10orf55Q5SWW7 151 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 IGKV1D-17A0A075B6S4 117 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 EREGO14944 169 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 FCN3O75636 299 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 KIAA1644Q3SXP7 199 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 HSPB9Q9BQS6 159 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 PAM16Q9Y3D7 125 aa7.77□□□□□ -1.17
PTPRB-204ENST00000538708 TGIF2-C20orf24A0A0A6YYL0 155 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 TMEM50AO95807 157 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 PRTN3P24158 256 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 CEACAM8P31997 349 aaPredicted RBP7.76□□□□□ -1.17
PTPRB-204ENST00000538708 TMEM183AQ8IXX5 376 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 HGFACQ04756 655 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 TRAV12-3A0A0B4J271 114 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 PYYP10082 97 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 IGKV2-40A0A087WW87 121 aaPredicted RBP7.76□□□□□ -1.17
PTPRB-204ENST00000538708 TRBV9A0A0B4J1U6 114 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 TNFSF13O75888 250 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 DNAL4O96015 105 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 IGKV2D-40P01614 121 aaPredicted RBP7.76□□□□□ -1.17
PTPRB-204ENST00000538708 SCGB1A1P11684 91 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 ZNF25P17030 456 aaPredicted RBP7.76□□□□□ -1.17
PTPRB-204ENST00000538708 IFI27P40305 119 aaPredicted RBP7.76□□□□□ -1.17
PTPRB-204ENST00000538708 APOC4P55056 127 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 NR2C2APQ86WQ0 139 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 IGKV1-27A0A075B6S5 117 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 A0A0A6YYD4 124 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 IGKV1-12A0A0C4DH73 117 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 CXorf65A6NEN9 183 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 IGKV1D-12P01611 117 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 HOXA5P20719 270 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 ATP5G3P48201 142 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 FHITP49789 147 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 H2BFSP57053 126 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 KLF17Q5JT82 389 aaPredicted RBP7.76□□□□□ -1.17
PTPRB-204ENST00000538708 BIVMQ86UB2 503 aa7.76□□□□□ -1.17
PTPRB-204ENST00000538708 A0A087WV48 116 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 LINC00862A6NCI5 91 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 PPIFP30405 207 aaKnown RBP7.75□□□□□ -1.17
PTPRB-204ENST00000538708 CFHR2P36980 270 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 A0A1B0GUT8 65 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 COTL1Q14019 142 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 SPATA45Q537H7 98 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 PGPEP1Q9NXJ5 209 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 DEFB130BP0DP73 79 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 DEFB130AP0DP74 79 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 RPL24P83731 157 aaKnown RBP7.75□□□□□ -1.17
PTPRB-204ENST00000538708 LINC00469Q8N7U9 141 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 VWA8A3KMH1 1905 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 ZNF815PA8K554 130 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 CD28P10747 220 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 Q6AWC8 147 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 RCC1LQ96I51 464 aaKnown RBP7.75□□□□□ -1.17
PTPRB-204ENST00000538708 NXT2Q9NPJ8 142 aaKnown RBP7.75□□□□□ -1.17
PTPRB-204ENST00000538708 PSG8Q9UQ74 426 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 CNTRLQ7Z7A1 2325 aa7.75□□□□□ -1.17
PTPRB-204ENST00000538708 VENTXO95231 258 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 APOHP02749 345 aaPredicted RBP7.74□□□□□ -1.17
PTPRB-204ENST00000538708 PET117Q6UWS5 81 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 RHPN1-AS1Q9BWJ2 59 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 VCX2Q9H322 139 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 PNRC2Q9NPJ4 139 aaKnown RBP7.74□□□□□ -1.17
PTPRB-204ENST00000538708 A0A1B0GW15 77 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 NUDT10Q8NFP7 164 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 KLHDC3Q9BQ90 382 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 PLXNA4Q9HCM2 1894 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 SCN8AQ9UQD0 1980 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 NDUFA3O95167 84 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 CD8AP01732 235 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 FOLR2P14207 255 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 FOXC2Q99958 501 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 EPDR1Q9UM22 224 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 OVOL3O00110 214 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 RPLP1P05386 114 aaKnown RBP7.74□□□□□ -1.17
PTPRB-204ENST00000538708 DAD1P61803 113 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 TMEM136Q6ZRR5 245 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 TRAF4Q9BUZ4 470 aaPredicted RBP7.74□□□□□ -1.17
PTPRB-204ENST00000538708 A0A1B0GWJ7 208 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 PRR32B1ATL7 298 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 SLC17A3O00476 420 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 CD55P08174 381 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 CD300CQ08708 224 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 DAZ1Q9NQZ3 744 aaKnown RBP7.74□□□□□ -1.17
PTPRB-204ENST00000538708 SIGLEC9Q9Y336 463 aa7.74□□□□□ -1.17
PTPRB-204ENST00000538708 TRIOBPQ9H2D6 2365 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 TRBV7-9A0A0J9YWB2 115 aa7.73□□□□□ -1.17
PTPRB-204ENST00000538708 ERASQ7Z444 233 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms