RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 hCG_1818297A0A087WSY0 165 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 A8MT66 165 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 TMEM114B3SHH9 223 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 SULT1B1O43704 296 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 TTRP02766 147 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 COX6A1P12074 109 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 SPI1P17947 270 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 PPIBP23284 216 aaKnown RBP0.92□□□□□ -2.26
CD44-238ENST00000534296 HOXA6P31267 233 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 CDKN2CP42773 168 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 DEFA1P59665 94 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 AP3S2P59780 193 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 ERVS71-1P61550 626 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 RANP62826 216 aaKnown RBP0.92□□□□□ -2.26
CD44-238ENST00000534296 HIST1H3AP68431 136 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 MRPS25P82663 173 aaKnown RBP0.92□□□□□ -2.26
CD44-238ENST00000534296 H3F3AP84243 136 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 PLCXD2Q0VAA5 305 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 GDPD1Q8N9F7 314 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 OR4C6Q8NH72 309 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 FAM172AQ8WUF8 416 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 AQP3Q92482 292 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 H1FXQ92522 213 aaKnown RBP0.92□□□□□ -2.26
CD44-238ENST00000534296 NMNAT1Q9HAN9 279 aaPredicted RBP0.92□□□□□ -2.26
CD44-238ENST00000534296 ACER3Q9NUN7 267 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 TAS2R4Q9NYW5 299 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 KLK9Q9UKQ9 250 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 CYSLTR1Q9Y271 337 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 CAMSAP1Q5T5Y3 1602 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 TONSLQ96HA7 1378 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 SCN10AQ9Y5Y9 1956 aa0.92□□□□□ -2.26
CD44-238ENST00000534296 PCF11O94913 1555 aaKnown RBP0.91□□□□□ -2.26
CD44-238ENST00000534296 SETBP1Q9Y6X0 1596 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 INTS1Q8N201 2190 aaKnown RBP0.91□□□□□ -2.26
CD44-238ENST00000534296 WRNQ14191 1432 aaPredicted RBP eCLIP0.91□□□□□ -2.26
CD44-238ENST00000534296 RIC1Q4ADV7 1423 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 SETD5Q9C0A6 1442 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 KMT2CQ8NEZ4 4911 aaKnown RBP0.91□□□□□ -2.26
CD44-238ENST00000534296 A0A087WX48 190 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 TRAV26-2A0A0B4J265 109 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 C7orf71A4D174 169 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 CLDN25C9JDP6 229 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 GEMIN2O14893 280 aaKnown RBP0.91□□□□□ -2.26
CD44-238ENST00000534296 PDE6DO43924 150 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 FADS1O60427 444 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 HYPMO75409 117 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 TCRBP04435 133 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 S100A6P06703 90 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 CTXN2P0C2S0 81 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 BAALC-AS2P0C853 105 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 FKBP2P26885 142 aaKnown RBP0.91□□□□□ -2.26
CD44-238ENST00000534296 SRSF6Q13247 344 aaKnown RBP0.91□□□□□ -2.26
CD44-238ENST00000534296 C10orf55Q5SWW7 151 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 TEX36Q5VZQ5 186 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 SIGLECL1Q8N7X8 197 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 C4orf3Q8WVX3 66 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 GPR146Q96CH1 333 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 C2orf50Q96LR7 162 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 PRAP1Q96NZ9 151 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 C20orf27Q9GZN8 174 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 DCSTAMPQ9H295 470 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 TVP23BQ9NYZ1 205 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 MRPL27Q9P0M9 148 aaKnown RBP0.91□□□□□ -2.26
CD44-238ENST00000534296 ARL2BPQ9Y2Y0 163 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 NUP155O75694 1391 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 MTUS2Q5JR59 1369 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 KIF24Q5T7B8 1368 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 KIF1BO60333 1816 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 NEO1Q92859 1461 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 AKAP13Q12802 2813 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 COL4A1P02462 1669 aa0.91□□□□□ -2.26
CD44-238ENST00000534296 UTP20O75691 2785 aaKnown RBP0.91□□□□□ -2.26
CD44-238ENST00000534296 CEP250Q9BV73 2442 aa0.9□□□□□ -2.26
CD44-238ENST00000534296 MED13Q9UHV7 2174 aa0.9□□□□□ -2.26
CD44-238ENST00000534296 hADV38S2A0JD32 116 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 C1orf196B1AJZ1 125 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 KPNA3O00505 521 aaPredicted RBP0.9□□□□□ -2.27
CD44-238ENST00000534296 CYB5BO43169 146 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 UBL3O95164 117 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 IGKV1-5P01602 117 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 SERPINE1P05121 402 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 C8GP07360 202 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 SMIM17P0DL12 118 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 SMIM10L2AP0DMW4 78 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 SMIM10L2BP0DMW5 78 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 MGST1P10620 155 aaKnown RBP0.9□□□□□ -2.27
CD44-238ENST00000534296 SRP14P37108 136 aaKnown RBP0.9□□□□□ -2.27
CD44-238ENST00000534296 RPS20P60866 119 aaKnown RBP0.9□□□□□ -2.27
CD44-238ENST00000534296 RAB4BP61018 213 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 EIF5AP63241 154 aaKnown RBP0.9□□□□□ -2.27
CD44-238ENST00000534296 CTAG1AP78358 180 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 REEP5Q00765 189 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 ZNF846Q147U1 533 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 TMED2Q15363 201 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 IAH1Q2TAA2 248 aaPredicted RBP0.9□□□□□ -2.27
CD44-238ENST00000534296 TMEM97Q5BJF2 176 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 ZNF826PQ6ZT77 177 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 LINC00311Q8N616 119 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 TERB2Q8NHR7 220 aa0.9□□□□□ -2.27
CD44-238ENST00000534296 PFN4Q8NHR9 129 aa0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms