RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FAM90A2PQ658T7 463 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 ETFRF1Q6IPR1 90 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 MZT2BQ6NZ67 158 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 LINC00322Q6ZN03 302 aaPredicted RBP9.72□□□□□ -0.85
VPS28-216ENST00000533806 GTSCR1Q86UQ5 136 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 SBSPONQ8IVN8 264 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 ZNF431Q8TF32 576 aaPredicted RBP9.72□□□□□ -0.85
VPS28-216ENST00000533806 NPIPB3Q92617 1050 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 CIB3Q96Q77 187 aaPredicted RBP9.72□□□□□ -0.85
VPS28-216ENST00000533806 NEURL2Q9BR09 285 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 SEC22CQ9BRL7 303 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 VSIRQ9H7M9 311 aa9.72□□□□□ -0.85
VPS28-216ENST00000533806 NBEAL2Q6ZNJ1 2754 aa9.71□□□□□ -0.85
VPS28-216ENST00000533806 APOHP02749 345 aaPredicted RBP9.71□□□□□ -0.86
VPS28-216ENST00000533806 OR10J1P30954 320 aa9.71□□□□□ -0.86
VPS28-216ENST00000533806 PAX9P55771 341 aa9.71□□□□□ -0.86
VPS28-216ENST00000533806 POLR2GP62487 172 aaKnown RBP eCLIP9.71□□□□□ -0.86
VPS28-216ENST00000533806 GAMTQ14353 236 aa9.71□□□□□ -0.86
VPS28-216ENST00000533806 GUCA2BQ16661 112 aa9.71□□□□□ -0.86
VPS28-216ENST00000533806 SLC16A13Q7RTY0 426 aa9.71□□□□□ -0.86
VPS28-216ENST00000533806 LILRB2Q8N423 598 aa9.71□□□□□ -0.86
VPS28-216ENST00000533806 RNF2Q99496 336 aa9.71□□□□□ -0.86
VPS28-216ENST00000533806 RHPN1-AS1Q9BWJ2 59 aa9.71□□□□□ -0.86
VPS28-216ENST00000533806 IGKV1D-37A0A075B6S9 117 aa9.7□□□□□ -0.86
VPS28-216ENST00000533806 WRBO00258 174 aa9.7□□□□□ -0.86
VPS28-216ENST00000533806 IFNA4P05014 189 aa9.7□□□□□ -0.86
VPS28-216ENST00000533806 IL5P05113 134 aa9.7□□□□□ -0.86
VPS28-216ENST00000533806 CRYBB3P26998 211 aa9.7□□□□□ -0.86
VPS28-216ENST00000533806 NKX2-1P43699 371 aaPredicted RBP9.7□□□□□ -0.86
VPS28-216ENST00000533806 CD81P60033 236 aa9.7□□□□□ -0.86
VPS28-216ENST00000533806 IAH1Q2TAA2 248 aaPredicted RBP9.7□□□□□ -0.86
VPS28-216ENST00000533806 ZBTB8BQ8NAP8 495 aaPredicted RBP9.7□□□□□ -0.86
VPS28-216ENST00000533806 OR1S2Q8NGQ3 325 aa9.7□□□□□ -0.86
VPS28-216ENST00000533806 ASCL2Q99929 193 aa9.7□□□□□ -0.86
VPS28-216ENST00000533806 SPAG8Q99932 426 aaPredicted RBP9.7□□□□□ -0.86
VPS28-216ENST00000533806 U3KQE9 123 aa9.7□□□□□ -0.86
VPS28-216ENST00000533806 IGHV3-49A0A0A0MS15 119 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 PMS2P5A8MQ11 134 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 IL15RAQ13261 267 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 RBPMS2Q6ZRY4 209 aaKnown RBP9.69□□□□□ -0.86
VPS28-216ENST00000533806 NRARPQ7Z6K4 114 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 C12orf45Q8N5I9 185 aaPredicted RBP9.69□□□□□ -0.86
VPS28-216ENST00000533806 DEFB125Q8N687 156 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 ST8SIA2Q92186 375 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 ACY3Q96HD9 319 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 SMIM8Q96KF7 97 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 GINS3Q9BRX5 216 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 WFDC10AQ9H1F0 79 aa9.69□□□□□ -0.86
VPS28-216ENST00000533806 IGKV1OR2-108A0A075B7D4 117 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 IGHV3OR16-13A0A075B7E8 117 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 IGHV3-74A0A0B4J1X5 117 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 OR11H12B2RN74 326 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 CCSO14618 274 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 SCGB2A1O75556 95 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 TOMM40O96008 361 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 MBPP02686 304 aaPredicted RBP9.68□□□□□ -0.86
VPS28-216ENST00000533806 RAB11AP62491 216 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 RPP30P78346 268 aaKnown RBP9.68□□□□□ -0.86
VPS28-216ENST00000533806 LAMTOR1Q6IAA8 161 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 THAP8Q8NA92 274 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 Q8WTZ3 238 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 TM2D3Q9BRN9 247 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 MARVELD1Q9BSK0 173 aa9.68□□□□□ -0.86
VPS28-216ENST00000533806 RCL1Q9Y2P8 373 aaKnown RBP9.68□□□□□ -0.86
VPS28-216ENST00000533806 RBMY1BA6NDE4 496 aaKnown RBP9.67□□□□□ -0.86
VPS28-216ENST00000533806 RBMY1EA6NEQ0 496 aaKnown RBP9.67□□□□□ -0.86
VPS28-216ENST00000533806 RBMY1DP0C7P1 496 aaKnown RBP9.67□□□□□ -0.86
VPS28-216ENST00000533806 RD3LP0DJH9 198 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 PSG1P11464 419 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 NPPCP23582 126 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 TAS2R30P59541 319 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 USF2Q15853 346 aaPredicted RBP9.67□□□□□ -0.86
VPS28-216ENST00000533806 HAGHQ16775 308 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 ODF3L2Q3SX64 289 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 SPANXN5Q5MJ07 72 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 TMEM14EPQ6UXP3 125 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 ENKURQ8TC29 256 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 CITED4Q96RK1 184 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 RAB40CQ96S21 281 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 FAM110AQ9BQ89 295 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 C11orf1Q9H5F2 150 aa9.67□□□□□ -0.86
VPS28-216ENST00000533806 STRAPQ9Y3F4 350 aaKnown RBP9.67□□□□□ -0.86
VPS28-216ENST00000533806 C7orf66A4D0T2 115 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 H3BP45 60 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 SSSCA1O60232 199 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 DFFBO76075 338 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 CD5P06127 495 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 ZNF90Q03938 601 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 SLC35E1Q96K37 410 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 METTL26Q96S19 204 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 TUBA4BQ9H853 241 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 PSENENQ9NZ42 101 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 GSKIPQ9P0R6 139 aa9.66□□□□□ -0.86
VPS28-216ENST00000533806 IGHV3-66A0A0C4DH42 116 aa9.65□□□□□ -0.86
VPS28-216ENST00000533806 OR4C46A6NHA9 309 aa9.65□□□□□ -0.86
VPS28-216ENST00000533806 SNRPGP15A8MWD9 76 aa9.65□□□□□ -0.86
VPS28-216ENST00000533806 TSC22D2O75157 780 aa9.65□□□□□ -0.86
VPS28-216ENST00000533806 IL4P05112 153 aa9.65□□□□□ -0.86
VPS28-216ENST00000533806 TCF24Q7RTU0 167 aa9.65□□□□□ -0.86
VPS28-216ENST00000533806 C2orf50Q96LR7 162 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms