RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 COLCA2A8K830 154 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 PDE6DO43924 150 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 HLA-DRB1P01911 266 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 PNRC1Q12796 327 aaPredicted RBP16.35■□□□□ 0.21
VPS28-209ENST00000528142 TTC9CQ8N5M4 171 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 OR4X1Q8NH49 305 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 PARLQ9H300 379 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 YTHDF2Q9Y5A9 579 aaKnown RBP16.35■□□□□ 0.21
VPS28-209ENST00000528142 A0A096LNT2 108 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 TRAV40A0A0B4J280 105 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 B4DSR2 109 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 C8orf88P0DMB2 117 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 TAS2R45P59539 299 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 MORN5Q5VZ52 161 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 PQLC2Q6ZP29 291 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 OR1L4Q8NGR5 311 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 RPUSD4Q96CM3 377 aaKnown RBP16.35■□□□□ 0.21
VPS28-209ENST00000528142 FAM167A-AS1Q96KT0 104 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 PFDN5Q99471 154 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 SMIM7Q9BQ49 75 aa16.35■□□□□ 0.21
VPS28-209ENST00000528142 A0A087WWC5 75 aa16.34■□□□□ 0.21
VPS28-209ENST00000528142 IGLC1P0CG04 106 aa16.34■□□□□ 0.21
VPS28-209ENST00000528142 OR51G1Q8NGK1 321 aa16.34■□□□□ 0.21
VPS28-209ENST00000528142 FANCD2OSQ96PS1 177 aa16.34■□□□□ 0.21
VPS28-209ENST00000528142 DOK5Q9P104 306 aa16.34■□□□□ 0.21
VPS28-209ENST00000528142 COX7A2P2O60397 106 aa16.33■□□□□ 0.21
VPS28-209ENST00000528142 KIAA0141Q14154 515 aaPredicted RBP16.33■□□□□ 0.21
VPS28-209ENST00000528142 ZNF674Q2M3X9 581 aa16.33■□□□□ 0.21
VPS28-209ENST00000528142 KLF17Q5JT82 389 aaPredicted RBP16.33■□□□□ 0.21
VPS28-209ENST00000528142 C10orf113Q5VZT2 155 aa16.33■□□□□ 0.21
VPS28-209ENST00000528142 SLC25A2Q9BXI2 301 aa16.33■□□□□ 0.21
VPS28-209ENST00000528142 GSX1Q9H4S2 264 aaPredicted RBP16.33■□□□□ 0.21
VPS28-209ENST00000528142 C7orf69Q9H7B7 122 aa16.33■□□□□ 0.21
VPS28-209ENST00000528142 TMEM167BQ9NRX6 74 aa16.33■□□□□ 0.21
VPS28-209ENST00000528142 NAT8Q9UHE5 227 aa16.33■□□□□ 0.21
VPS28-209ENST00000528142 IGLV11-55A0A075B6I3 123 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 B4DEV8 164 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 F6UZH7 168 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 IGHV4-38-2P0DP08 117 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 BPIFB3P59826 476 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 BRD3OSQ6XYD6 125 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 C15orf54Q8N8G6 183 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 PIFOQ8TCI5 191 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 RASL11BQ9BPW5 248 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 HSPB9Q9BQS6 159 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 MEGF9Q9H1U4 602 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 ARL2-SNX15V9GYD0 113 aa16.33■□□□□ 0.2
VPS28-209ENST00000528142 TRAV5A0A0B4J249 113 aa16.32■□□□□ 0.2
VPS28-209ENST00000528142 TMEM241Q24JQ0 296 aa16.32■□□□□ 0.2
VPS28-209ENST00000528142 ISOC2Q96AB3 205 aa16.32■□□□□ 0.2
VPS28-209ENST00000528142 HIF1ANQ9NWT6 349 aa16.32■□□□□ 0.2
VPS28-209ENST00000528142 ANKRD17O75179 2603 aaKnown RBP16.32■□□□□ 0.2
VPS28-209ENST00000528142 MAP1AP78559 2803 aaPredicted RBP16.31■□□□□ 0.2
VPS28-209ENST00000528142 ELOA3CA0A087WX78 387 aaPredicted RBP16.31■□□□□ 0.2
VPS28-209ENST00000528142 A0A0U1RQK1 487 aa16.31■□□□□ 0.2
VPS28-209ENST00000528142 PLP1P60201 277 aa16.31■□□□□ 0.2
VPS28-209ENST00000528142 ZNF355PQ9NSJ1 428 aa16.31■□□□□ 0.2
VPS28-209ENST00000528142 FASNP49327 2511 aaKnown RBP16.31■□□□□ 0.2
VPS28-209ENST00000528142 TRAV20A0A0B4J274 112 aa16.31■□□□□ 0.2
VPS28-209ENST00000528142 OR7C2O60412 319 aa16.31■□□□□ 0.2
VPS28-209ENST00000528142 UHRF2Q96PU4 802 aa16.31■□□□□ 0.2
VPS28-209ENST00000528142 IGKV1-17P01599 117 aa16.3■□□□□ 0.2
VPS28-209ENST00000528142 ATF4P18848 351 aaPredicted RBP16.3■□□□□ 0.2
VPS28-209ENST00000528142 YPEL4Q96NS1 127 aa16.3■□□□□ 0.2
VPS28-209ENST00000528142 RBM14Q96PK6 669 aaKnown RBP16.3■□□□□ 0.2
VPS28-209ENST00000528142 NDUFB4O95168 129 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 GATA3P23771 443 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 OR5AU1Q8NGC0 362 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 SGMS2Q8NHU3 365 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 BEX4Q9NWD9 120 aaPredicted RBP16.29■□□□□ 0.2
VPS28-209ENST00000528142 OR2C1O95371 312 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 AVPP01185 164 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 OR10J4P0C629 311 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 PSG1P11464 419 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 ORM2P19652 201 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 RPL23P62829 140 aaKnown RBP16.29■□□□□ 0.2
VPS28-209ENST00000528142 TIGITQ495A1 244 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 LINC00305Q7Z4B0 112 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 C5orf56Q8N8D9 126 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 OR1B1Q8NGR6 318 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 HIST1H2BAQ96A08 127 aa16.29■□□□□ 0.2
VPS28-209ENST00000528142 SCO2A0A1W2PP80 73 aa16.28■□□□□ 0.2
VPS28-209ENST00000528142 HYPMO75409 117 aa16.28■□□□□ 0.2
VPS28-209ENST00000528142 LINC01356Q8N9X3 169 aa16.28■□□□□ 0.2
VPS28-209ENST00000528142 OR5T1Q8NG75 326 aa16.28■□□□□ 0.2
VPS28-209ENST00000528142 C11orf52Q96A22 123 aa16.28■□□□□ 0.2
VPS28-209ENST00000528142 SOX21Q9Y651 276 aaPredicted RBP16.28■□□□□ 0.2
VPS28-209ENST00000528142 KLK9Q2XQG4 91 aa16.27■□□□□ 0.2
VPS28-209ENST00000528142 ZNF48Q96MX3 618 aaPredicted RBP16.27■□□□□ 0.2
VPS28-209ENST00000528142 DERL1Q9BUN8 251 aa16.27■□□□□ 0.2
VPS28-209ENST00000528142 KLK9Q9UKQ9 250 aa16.27■□□□□ 0.2
VPS28-209ENST00000528142 LOC105371267A0A1B0GV96 52 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 CXorf65A6NEN9 183 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 MT-ND4LP03901 98 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 DEFB113Q30KQ7 82 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 TMEM242Q9NWH2 141 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 A0A1W2PRE2 83 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 ATP6V0E1O15342 81 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 NDUFB8O95169 186 aa16.26■□□□□ 0.19
VPS28-209ENST00000528142 LOXL1Q08397 574 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms