RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 FAM90A26D6RGX4 464 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 M0R2N4 97 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 CD3DP04234 171 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 AP2S1P53680 142 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-202ENST00000527827 SPCS3P61009 180 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 NCS1P62166 190 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 OR1S2Q8NGQ3 325 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 Q8WTZ3 238 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 RRNAD1Q96FB5 475 aaKnown RBP16.9■□□□□ 0.3
CPSF1-202ENST00000527827 NDUFAF3Q9BU61 184 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 C1QTNF4Q9BXJ3 329 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 XCL2Q9UBD3 114 aa16.9■□□□□ 0.3
CPSF1-202ENST00000527827 PKD1P98161 4303 aa16.89■□□□□ 0.3
CPSF1-202ENST00000527827 RPS10-NUDT3A0A1W2PQS6 291 aa16.89■□□□□ 0.29
CPSF1-202ENST00000527827 H3BMM0 161 aa16.89■□□□□ 0.29
CPSF1-202ENST00000527827 HTR2BP41595 481 aa16.89■□□□□ 0.29
CPSF1-202ENST00000527827 RND2P52198 227 aa16.89■□□□□ 0.29
CPSF1-202ENST00000527827 YPEL3P61236 119 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-202ENST00000527827 DHODHQ02127 395 aa16.89■□□□□ 0.29
CPSF1-202ENST00000527827 USF2Q15853 346 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-202ENST00000527827 COPZ2Q9P299 210 aa16.89■□□□□ 0.29
CPSF1-202ENST00000527827 OR10J1P30954 320 aa16.88■□□□□ 0.29
CPSF1-202ENST00000527827 NUTF2P61970 127 aaKnown RBP16.88■□□□□ 0.29
CPSF1-202ENST00000527827 CCDC71LQ8N9Z2 235 aa16.88■□□□□ 0.29
CPSF1-202ENST00000527827 OR4D10Q8NGI6 311 aa16.88■□□□□ 0.29
CPSF1-202ENST00000527827 OR13C8Q8NGS7 320 aa16.88■□□□□ 0.29
CPSF1-202ENST00000527827 OR52E5Q8NH55 327 aa16.88■□□□□ 0.29
CPSF1-202ENST00000527827 OR52I2Q8NH67 350 aa16.88■□□□□ 0.29
CPSF1-202ENST00000527827 RNASE11Q8TAA1 199 aaKnown RBP16.88■□□□□ 0.29
CPSF1-202ENST00000527827 SEPSECSQ9HD40 501 aaKnown RBP16.88■□□□□ 0.29
CPSF1-202ENST00000527827 SLC25A4P12235 298 aa16.87■□□□□ 0.29
CPSF1-202ENST00000527827 NPY1RP25929 384 aa16.87■□□□□ 0.29
CPSF1-202ENST00000527827 VBP1P61758 197 aa16.87■□□□□ 0.29
CPSF1-202ENST00000527827 SNRPD3P62318 126 aaKnown RBP16.87■□□□□ 0.29
CPSF1-202ENST00000527827 C2orf83Q53S99 150 aa16.87■□□□□ 0.29
CPSF1-202ENST00000527827 TERB2Q8NHR7 220 aa16.87■□□□□ 0.29
CPSF1-202ENST00000527827 ZFAND1Q8TCF1 268 aa16.87■□□□□ 0.29
CPSF1-202ENST00000527827 NRN1Q9NPD7 142 aa16.87■□□□□ 0.29
CPSF1-202ENST00000527827 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-202ENST00000527827 IL4P05112 153 aa16.86■□□□□ 0.29
CPSF1-202ENST00000527827 TBPP20226 339 aa16.86■□□□□ 0.29
CPSF1-202ENST00000527827 LGALS9BQ3B8N2 356 aa16.86■□□□□ 0.29
CPSF1-202ENST00000527827 ZNF705AQ6ZN79 300 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-202ENST00000527827 FAM219AQ8IW50 185 aa16.86■□□□□ 0.29
CPSF1-202ENST00000527827 LHFPL5Q8TAF8 219 aa16.86■□□□□ 0.29
CPSF1-202ENST00000527827 RNASEH2CQ8TDP1 164 aaKnown RBP16.86■□□□□ 0.29
CPSF1-202ENST00000527827 TMEM170AQ8WVE7 144 aa16.86■□□□□ 0.29
CPSF1-202ENST00000527827 HEYLQ9NQ87 328 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-202ENST00000527827 MTFP1Q9UDX5 166 aa16.86■□□□□ 0.29
CPSF1-202ENST00000527827 A0A087WXM4 84 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 BUB3O43684 328 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 B3GALNT1O75752 331 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 NXPH3O95157 252 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 CDS2O95674 445 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 HLA-DRB4P13762 266 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 SIGLEC15Q6ZMC9 328 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 MARCH1Q8TCQ1 289 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 NEU1Q99519 415 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 FUNDC2Q9BWH2 189 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 TMEM222Q9H0R3 208 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 VCX3AQ9NNX9 186 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 HLA-DRB4X5D2U9 266 aa16.85■□□□□ 0.29
CPSF1-202ENST00000527827 ZNF705FA8MVS1 300 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-202ENST00000527827 FAM25AB3EWG3 89 aa16.84■□□□□ 0.29
CPSF1-202ENST00000527827 FAM25CB3EWG5 89 aa16.84■□□□□ 0.29
CPSF1-202ENST00000527827 FAM25GB3EWG6 89 aa16.84■□□□□ 0.29
CPSF1-202ENST00000527827 CD74P04233 296 aa16.84■□□□□ 0.29
CPSF1-202ENST00000527827 OR5AC1P0C628 307 aa16.84■□□□□ 0.29
CPSF1-202ENST00000527827 ZNF705DP0CH99 300 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-202ENST00000527827 ZNF705BP0CI00 300 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-202ENST00000527827 SLC24A4Q8NFF2 622 aa16.84■□□□□ 0.29
CPSF1-202ENST00000527827 GLYATL2Q8WU03 294 aa16.84■□□□□ 0.29
CPSF1-202ENST00000527827 TOMM40O96008 361 aa16.83■□□□□ 0.28
CPSF1-202ENST00000527827 SCGB2B2Q4G0G5 96 aa16.83■□□□□ 0.28
CPSF1-202ENST00000527827 NPIPB3Q92617 1050 aa16.83■□□□□ 0.28
CPSF1-202ENST00000527827 GPR146Q96CH1 333 aa16.83■□□□□ 0.28
CPSF1-202ENST00000527827 ABHD1Q96SE0 405 aa16.83■□□□□ 0.28
CPSF1-202ENST00000527827 CACNG5Q9UF02 275 aa16.83■□□□□ 0.28
CPSF1-202ENST00000527827 SPART-AS1P0CW21 52 aa16.82■□□□□ 0.28
CPSF1-202ENST00000527827 NKX2-1P43699 371 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-202ENST00000527827 DEFB1P60022 68 aa16.82■□□□□ 0.28
CPSF1-202ENST00000527827 GDF5OSQ5U4N7 250 aa16.82■□□□□ 0.28
CPSF1-202ENST00000527827 SELENOHQ8IZQ5 122 aaKnown RBP16.82■□□□□ 0.28
CPSF1-202ENST00000527827 TMEM229BQ8NBD8 167 aa16.82■□□□□ 0.28
CPSF1-202ENST00000527827 RBPMSQ93062 196 aaKnown RBP16.82■□□□□ 0.28
CPSF1-202ENST00000527827 RD3LP0DJH9 198 aa16.81■□□□□ 0.28
CPSF1-202ENST00000527827 RORCP51449 518 aa16.81■□□□□ 0.28
CPSF1-202ENST00000527827 EMP1P54849 157 aa16.81■□□□□ 0.28
CPSF1-202ENST00000527827 Q6ZR54 194 aa16.81■□□□□ 0.28
CPSF1-202ENST00000527827 RTBDNQ9BSG5 229 aaPredicted RBP16.81■□□□□ 0.28
CPSF1-202ENST00000527827 EXTL2Q9UBQ6 330 aa16.81■□□□□ 0.28
CPSF1-202ENST00000527827 ABCA13Q86UQ4 5058 aa16.81■□□□□ 0.28
CPSF1-202ENST00000527827 TEX13DA0A0J9YY54 714 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-202ENST00000527827 SMIM9A6NGZ8 99 aa16.8■□□□□ 0.28
CPSF1-202ENST00000527827 CEBPZOSA8MTT3 80 aa16.8■□□□□ 0.28
CPSF1-202ENST00000527827 GSTZ1O43708 216 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-202ENST00000527827 RAB3DO95716 219 aa16.8■□□□□ 0.28
CPSF1-202ENST00000527827 IFNA10P01566 189 aa16.8■□□□□ 0.28
CPSF1-202ENST00000527827 PSG1P11464 419 aa16.8■□□□□ 0.28
CPSF1-202ENST00000527827 FXYD7P58549 80 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms