RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 COX6CP09669 75 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 RSPO1Q2MKA7 263 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-205ENST00000522122 PPP1R27Q86WC6 154 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 OR11H1Q8NG94 326 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 OR11H2Q8NH07 326 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 ST6GALNAC6Q969X2 333 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 CADP27708 2225 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 MUC21A0A0G2JKD1 596 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 MUC21A0A140T8X8 626 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 MUC21Q5SSG8 566 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 RNF138Q8WVD3 245 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 KIR2DL4Q99706 377 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 GNB1LQ9BYB4 327 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 PLA2G2EQ9NZK7 142 aa11.43□□□□□ -0.58
SYNPO-205ENST00000522122 PRSS2P07478 247 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 TIMP3P35625 211 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 C2orf88Q9BSF0 95 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 TMEM133Q9H2Q1 129 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 RPUSD1Q9UJJ7 312 aaKnown RBP11.42□□□□□ -0.58
SYNPO-205ENST00000522122 SHANK1Q9Y566 2161 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 HIST1H1AQ02539 215 aaPredicted RBP11.42□□□□□ -0.58
SYNPO-205ENST00000522122 SMAGPQ0VAQ4 97 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 DMRTA1Q5VZB9 504 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 Q6P435 159 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 Q6ZSR3 168 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 ORMDL3Q8N138 153 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 BEND2Q8NDZ0 799 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 DDB2Q92466 427 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 ARPC1AQ92747 370 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 SSBP4Q9BWG4 385 aaPredicted RBP11.42□□□□□ -0.58
SYNPO-205ENST00000522122 TMEM160Q9NX00 188 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 LAMTOR2Q9Y2Q5 125 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 IGKV1-6A0A0C4DH72 117 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 PAX9P55771 341 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 Q0VFX4 171 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 LINC01551Q86U37 167 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 ST6GALNAC3Q8NDV1 305 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 DOCK9Q9BZ29 2069 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 H7C2G1 150 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 IGKV3-15P01624 115 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 FOXL1Q12952 345 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 PIMREGQ9BSJ6 248 aa11.42□□□□□ -0.58
SYNPO-205ENST00000522122 TRAV8-6A0A0B4J262 113 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 TRGV3P03979 118 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 GPR183P32249 361 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 FAM159AQ6UWV7 190 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 NEU4Q8WWR8 484 aaPredicted RBP11.41□□□□□ -0.58
SYNPO-205ENST00000522122 CACNA1BQ00975 2339 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 ZNF257Q9Y2Q1 563 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 SNAI2O43623 268 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 ATP5J2P56134 94 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 KLRB1Q12918 225 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 PCNX1Q96RV3 2341 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 IGHV3OR16-8A0A075B7F1 116 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 IGHV1-46P01743 117 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 SELLP14151 372 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 FER1L6-AS1Q8NA97 138 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 RAXQ9Y2V3 346 aa11.41□□□□□ -0.58
SYNPO-205ENST00000522122 LILRA1O75019 489 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 ATP5LO75964 103 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 TSPOP30536 169 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 PDLIM4P50479 330 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 FAM74A4Q5TZK3 123 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 SMIM12Q96EX1 92 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 TMEM50AO95807 157 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 LGALS3P17931 250 aaKnown RBP11.4□□□□□ -0.58
SYNPO-205ENST00000522122 CYB5R2Q6BCY4 276 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 C20orf204Q6ZNR8 217 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 Q6ZRM9 215 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 COLCA1Q6ZS62 124 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 OR10W1Q8NGF6 305 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 PLSCR4Q9NRQ2 329 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 IGHV3-66A0A0C4DH42 116 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 M0R381 172 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 NBR2O15453 112 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 SMIM13P0DJ93 91 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 CD59P13987 128 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 PCP4P48539 62 aa11.4□□□□□ -0.58
SYNPO-205ENST00000522122 IGHV3OR16-10A0A075B7F0 116 aa11.4□□□□□ -0.59
SYNPO-205ENST00000522122 CRXO43186 299 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-205ENST00000522122 PSMG4Q5JS54 123 aa11.39□□□□□ -0.59
SYNPO-205ENST00000522122 PVRIGQ6DKI7 326 aa11.39□□□□□ -0.59
SYNPO-205ENST00000522122 RNF125Q96EQ8 232 aa11.39□□□□□ -0.59
SYNPO-205ENST00000522122 GZMBP10144 247 aa11.39□□□□□ -0.59
SYNPO-205ENST00000522122 NUTF2P61970 127 aaKnown RBP11.39□□□□□ -0.59
SYNPO-205ENST00000522122 OR10J3Q5JRS4 329 aa11.39□□□□□ -0.59
SYNPO-205ENST00000522122 PROK2Q9HC23 129 aa11.39□□□□□ -0.59
SYNPO-205ENST00000522122 NOTCH3Q9UM47 2321 aa11.39□□□□□ -0.59
SYNPO-205ENST00000522122 ZNF726P1Q15940 193 aa11.39□□□□□ -0.59
SYNPO-205ENST00000522122 SEPSECSQ9HD40 501 aaKnown RBP11.39□□□□□ -0.59
SYNPO-205ENST00000522122 CA1P00915 261 aaPredicted RBP11.38□□□□□ -0.59
SYNPO-205ENST00000522122 PRB3Q04118 309 aaPredicted RBP11.38□□□□□ -0.59
SYNPO-205ENST00000522122 C1orf194Q5T5A4 169 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 TTC9CQ8N5M4 171 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 DERL1Q9BUN8 251 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 ZNF56Q15929 161 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 PAPPA-AS1Q5QFB9 102 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 CD177Q8N6Q3 437 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 HS3ST6Q96QI5 342 aa11.38□□□□□ -0.59
SYNPO-205ENST00000522122 METRNQ9UJH8 293 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms