RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 FGFRL1Q8N441 504 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 GVQW1Q8N7I0 195 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 TEX45Q8NA69 505 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 GP6Q9HCN6 339 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 RLFQ13129 1914 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 TMSB15BA0A087X1C1 80 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 IGKV6D-21A0A0A0MT36 114 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 TRAV25A0A0B4J276 109 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 SPRY1O43609 319 aaPredicted RBP2.99□□□□□ -1.93
USP53-205ENST00000509769 LINC00271P0C7V0 271 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 P2RY2P41231 377 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 LY6G5CQ5SRR4 150 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 INO80CQ6PI98 192 aaPredicted RBP2.99□□□□□ -1.93
USP53-205ENST00000509769 CD164L2Q6UWJ8 174 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 RFLNBQ8N5W9 214 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 METTL27Q8N6F8 245 aaPredicted RBP2.99□□□□□ -1.93
USP53-205ENST00000509769 BAHD1Q8TBE0 780 aaPredicted RBP2.99□□□□□ -1.93
USP53-205ENST00000509769 TSACCQ96A04 125 aaPredicted RBP2.99□□□□□ -1.93
USP53-205ENST00000509769 SRSF8Q9BRL6 282 aaKnown RBP2.99□□□□□ -1.93
USP53-205ENST00000509769 JPT2Q9H910 190 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 DKK4Q9UBT3 224 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 TCF19Q9Y242 345 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 PRSS21Q9Y6M0 314 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 MYH3P11055 1940 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 CEACAM4O75871 244 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 CD3EP07766 207 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 CXCL1P09341 107 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 SMIM10L1P0DMW3 83 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 FXYD3Q14802 87 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 STPG1Q5TH74 334 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 Q8N8P6 123 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 FDCSPQ8NFU4 85 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 ST6GALNAC6Q969X2 333 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 SMIM10Q96HG1 83 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 Q96M66 194 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 ZNF488Q96MN9 340 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 INSM2Q96T92 566 aaPredicted RBP2.99□□□□□ -1.93
USP53-205ENST00000509769 CALYQ9NYX4 217 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 RNF7Q9UBF6 113 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 ANAPC10Q9UM13 185 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 WDR83OSQ9Y284 106 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 RNF114Q9Y508 228 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 LOXHD1Q8IVV2 1947 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 A0A087X0K7 114 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 TRAV8-3A0A0A6YYJ7 113 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 IGHV1-69DA0A0B4J2H0 117 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 TRGV8A0A0C4DH27 118 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 TRBV10-2A0A0K0K1G8 114 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CGB1A6NKQ9 187 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 PFN1P07737 140 aaKnown RBP2.98□□□□□ -1.93
USP53-205ENST00000509769 RPS28P62857 69 aaKnown RBP2.98□□□□□ -1.93
USP53-205ENST00000509769 ID3Q02535 119 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CD69Q07108 199 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 KIAA0040Q15053 153 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 LINC01620Q4KN68 170 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 MSRB3Q8IXL7 192 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 FAM19A2Q8N3H0 131 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 DPH3P1Q9H4G8 78 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 DOCK2Q92608 1830 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 TCF20Q9UGU0 1960 aaKnown RBP2.98□□□□□ -1.93
USP53-205ENST00000509769 C21orf140B9A014 251 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 PPIHO43447 177 aaKnown RBP2.98□□□□□ -1.93
USP53-205ENST00000509769 CRYGSP22914 178 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 GAS1P54826 345 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 ERCC8Q13216 396 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 TRA2AQ13595 282 aaKnown RBP eCLIP2.98□□□□□ -1.93
USP53-205ENST00000509769 C12orf74Q32Q52 190 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 Q5BKY6 102 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 FAM219BQ5XKK7 198 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 SP5Q6BEB4 398 aaPredicted RBP2.98□□□□□ -1.93
USP53-205ENST00000509769 C16orf52Q8NHV5 167 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 NABP1Q96AH0 204 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 PYGO2Q9BRQ0 406 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 TIMM21Q9BVV7 248 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 ORMDL1Q9P0S3 153 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CROCCQ5TZA2 2017 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CENPVL1A0A0U1RR11 272 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CENPVL3A0A0U1RRI6 287 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 FAM236AA0A1B0GUQ0 79 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 FAM236BA0A1B0GV22 79 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CCL25O15444 150 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 SNAI2O43623 268 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 EIF4EBP3O60516 100 aaPredicted RBP2.98□□□□□ -1.93
USP53-205ENST00000509769 CFC1BP0CG36 223 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CFC1P0CG37 223 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CDAP32320 146 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 GZMMP51124 257 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 RHOHQ15669 191 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CNEP1R1Q8N9A8 125 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 TMEM52Q8NDY8 209 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CYB5D2Q8WUJ1 264 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 COL4A4P53420 1690 aaPredicted RBP2.98□□□□□ -1.93
USP53-205ENST00000509769 SCO2A0A1W2PP80 73 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 GLI4P10075 376 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 CD28P10747 220 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 VDAC2P45880 294 aaPredicted RBP2.98□□□□□ -1.93
USP53-205ENST00000509769 TMEM158Q8WZ71 300 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 RNF126Q9BV68 326 aa2.98□□□□□ -1.93
USP53-205ENST00000509769 METTL12A8MUP2 240 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 CHKB-CPT1BH3BT56 60 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms