RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 CSTL1Q9H114 145 aa13.2□□□□□ -0.3
TPM3-220ENST00000509601 U3KQE9 123 aa13.2□□□□□ -0.3
TPM3-220ENST00000509601 A0A0J9YWU9 116 aa13.19□□□□□ -0.3
TPM3-220ENST00000509601 RPS10-NUDT3A0A1W2PQS6 291 aa13.19□□□□□ -0.3
TPM3-220ENST00000509601 CCR6P51684 374 aa13.19□□□□□ -0.3
TPM3-220ENST00000509601 RBMS2Q15434 407 aaKnown RBP13.19□□□□□ -0.3
TPM3-220ENST00000509601 PYDC2Q56P42 97 aa13.19□□□□□ -0.3
TPM3-220ENST00000509601 LYG2Q86SG7 212 aa13.19□□□□□ -0.3
TPM3-220ENST00000509601 RBM38Q9H0Z9 239 aaKnown RBP13.19□□□□□ -0.3
TPM3-220ENST00000509601 HSPB7Q9UBY9 170 aa13.19□□□□□ -0.3
TPM3-220ENST00000509601 TRAV2A0A0B4J234 112 aa13.18□□□□□ -0.3
TPM3-220ENST00000509601 A0A1W2PS18 150 aa13.18□□□□□ -0.3
TPM3-220ENST00000509601 DNASE2O00115 360 aaPredicted RBP13.18□□□□□ -0.3
TPM3-220ENST00000509601 SLC25A4P12235 298 aa13.18□□□□□ -0.3
TPM3-220ENST00000509601 RND2P52198 227 aa13.18□□□□□ -0.3
TPM3-220ENST00000509601 YPEL3P61236 119 aaPredicted RBP13.18□□□□□ -0.3
TPM3-220ENST00000509601 CCDC190Q86UF4 302 aa13.18□□□□□ -0.3
TPM3-220ENST00000509601 LGI3Q8N145 548 aa13.18□□□□□ -0.3
TPM3-220ENST00000509601 OR1S2Q8NGQ3 325 aa13.18□□□□□ -0.3
TPM3-220ENST00000509601 METTL26Q96S19 204 aa13.18□□□□□ -0.3
TPM3-220ENST00000509601 CACFD1Q9UGQ2 172 aa13.18□□□□□ -0.3
TPM3-220ENST00000509601 BIRC6Q9NR09 4857 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 NPY1RP25929 384 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 DEFB131AP59861 70 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 RPL11P62913 178 aaKnown RBP13.17□□□□□ -0.3
TPM3-220ENST00000509601 SMCO1Q147U7 214 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 TOMM5Q8N4H5 51 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 NPIPB3Q92617 1050 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 RBKSQ9H477 322 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 TMEM231Q9H6L2 316 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 U3KQ87 197 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 AGRNO00468 2067 aa13.17□□□□□ -0.3
TPM3-220ENST00000509601 CCDC160A6NGH7 325 aa13.16□□□□□ -0.3
TPM3-220ENST00000509601 MPTX1A8MV57 137 aa13.16□□□□□ -0.3
TPM3-220ENST00000509601 PITX3O75364 302 aa13.16□□□□□ -0.3
TPM3-220ENST00000509601 ANXA3P12429 323 aa13.16□□□□□ -0.3
TPM3-220ENST00000509601 OR10J1P30954 320 aa13.16□□□□□ -0.3
TPM3-220ENST00000509601 FAUP35544 74 aaKnown RBP13.16□□□□□ -0.3
TPM3-220ENST00000509601 P2RY1P47900 373 aa13.16□□□□□ -0.3
TPM3-220ENST00000509601 NOXA1Q86UR1 476 aa13.16□□□□□ -0.3
TPM3-220ENST00000509601 DTD1Q8TEA8 209 aa13.16□□□□□ -0.3
TPM3-220ENST00000509601 Q8WTZ3 238 aa13.16□□□□□ -0.3
TPM3-220ENST00000509601 K7EQG2 157 aa13.15□□□□□ -0.3
TPM3-220ENST00000509601 SCGB2A1O75556 95 aa13.15□□□□□ -0.3
TPM3-220ENST00000509601 IFNA10P01566 189 aa13.15□□□□□ -0.3
TPM3-220ENST00000509601 AP3S2P59780 193 aa13.15□□□□□ -0.3
TPM3-220ENST00000509601 TMEM128Q5BJH2 165 aa13.15□□□□□ -0.3
TPM3-220ENST00000509601 LEMD1Q68G75 181 aa13.15□□□□□ -0.3
TPM3-220ENST00000509601 ETFRF1Q6IPR1 90 aa13.15□□□□□ -0.3
TPM3-220ENST00000509601 KMT2AQ03164 3969 aa13.15□□□□□ -0.3
TPM3-220ENST00000509601 ATF4P18848 351 aaPredicted RBP13.14□□□□□ -0.31
TPM3-220ENST00000509601 S100A5P33763 92 aa13.14□□□□□ -0.31
TPM3-220ENST00000509601 SRPXP78539 464 aa13.14□□□□□ -0.31
TPM3-220ENST00000509601 C16orf54Q6UWD8 224 aa13.14□□□□□ -0.31
TPM3-220ENST00000509601 TMED4Q7Z7H5 227 aa13.14□□□□□ -0.31
TPM3-220ENST00000509601 LRTM2Q8N967 370 aa13.14□□□□□ -0.31
TPM3-220ENST00000509601 DCANP1Q8TF63 244 aa13.14□□□□□ -0.31
TPM3-220ENST00000509601 RABAC1Q9UI14 185 aa13.14□□□□□ -0.31
TPM3-220ENST00000509601 HNRNPCP07910 306 aaKnown RBP eCLIP13.13□□□□□ -0.31
TPM3-220ENST00000509601 USF2Q15853 346 aaPredicted RBP13.13□□□□□ -0.31
TPM3-220ENST00000509601 STXBP6Q8NFX7 210 aa13.13□□□□□ -0.31
TPM3-220ENST00000509601 GATAD1Q8WUU5 269 aa13.13□□□□□ -0.31
TPM3-220ENST00000509601 DEDD2Q8WXF8 326 aa13.13□□□□□ -0.31
TPM3-220ENST00000509601 ACY3Q96HD9 319 aa13.13□□□□□ -0.31
TPM3-220ENST00000509601 SLC25A21Q9BQT8 299 aaPredicted RBP13.13□□□□□ -0.31
TPM3-220ENST00000509601 VPS13DQ5THJ4 4388 aa13.13□□□□□ -0.31
TPM3-220ENST00000509601 DUXBA0A1W2PPF3 345 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 ZNF701M0R085 212 aaPredicted RBP13.12□□□□□ -0.31
TPM3-220ENST00000509601 JTBO76095 146 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 TOMM40O96008 361 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 GIG44P09565 113 aaPredicted RBP13.12□□□□□ -0.31
TPM3-220ENST00000509601 RD3LP0DJH9 198 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 PSG1P11464 419 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 GPX4P36969 197 aaPredicted RBP13.12□□□□□ -0.31
TPM3-220ENST00000509601 ATP5IP56385 69 aaPredicted RBP13.12□□□□□ -0.31
TPM3-220ENST00000509601 PMS2P11Q13670 270 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 OR1S1Q8NH92 325 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 GLMPQ8WWB7 406 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 GRAMD2BQ96HH9 432 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 RARRES2Q99969 163 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 SRRQ9GZT4 340 aa13.12□□□□□ -0.31
TPM3-220ENST00000509601 BUB3O43684 328 aa13.11□□□□□ -0.31
TPM3-220ENST00000509601 SFT2D2O95562 160 aa13.11□□□□□ -0.31
TPM3-220ENST00000509601 IL4P05112 153 aa13.11□□□□□ -0.31
TPM3-220ENST00000509601 PPP1R1AQ13522 171 aa13.11□□□□□ -0.31
TPM3-220ENST00000509601 GAMTQ14353 236 aa13.11□□□□□ -0.31
TPM3-220ENST00000509601 BAK1Q16611 211 aa13.11□□□□□ -0.31
TPM3-220ENST00000509601 NARS2Q96I59 477 aaKnown RBP13.11□□□□□ -0.31
TPM3-220ENST00000509601 IGKV1D-37A0A075B6S9 117 aa13.1□□□□□ -0.31
TPM3-220ENST00000509601 CXorf65A6NEN9 183 aa13.1□□□□□ -0.31
TPM3-220ENST00000509601 IFNA4P05014 189 aa13.1□□□□□ -0.31
TPM3-220ENST00000509601 SLC25A6P12236 298 aa13.1□□□□□ -0.31
TPM3-220ENST00000509601 CEMP1Q6PRD7 247 aaPredicted RBP13.1□□□□□ -0.31
TPM3-220ENST00000509601 TRPT1Q86TN4 253 aaKnown RBP13.1□□□□□ -0.31
TPM3-220ENST00000509601 OR11H2Q8NH07 326 aa13.1□□□□□ -0.31
TPM3-220ENST00000509601 HELTA6NFD8 242 aa13.09□□□□□ -0.31
TPM3-220ENST00000509601 KNCNA6PVL3 124 aa13.09□□□□□ -0.31
TPM3-220ENST00000509601 CA1P00915 261 aaPredicted RBP13.09□□□□□ -0.31
TPM3-220ENST00000509601 ZNF688P0C7X2 276 aa13.09□□□□□ -0.31
TPM3-220ENST00000509601 VAMP1P23763 118 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms