RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 OR5C1Q8NGR4 320 aa13.79□□□□□ -0.2
SQSTM1-209ENST00000504627 OR1P1Q8NH06 330 aa13.79□□□□□ -0.2
SQSTM1-209ENST00000504627 F11RQ9Y624 299 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-209ENST00000504627 TENM3Q9P273 2699 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 CORTO00230 105 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 IFNA4P05014 189 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 CRYGCP07315 174 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 CTRB1P17538 263 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 SLC38A11Q08AI6 406 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 ZNF266Q14584 549 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 CTRB2Q6GPI1 263 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 OR8G2PQ6IF36 304 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 SLC51BQ86UW2 128 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 LILRB2Q8N423 598 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 RNASEH2CQ8TDP1 164 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 USMG5Q96IX5 58 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 ATP5SQ99766 215 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 GGACTQ9BVM4 153 aa13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 PEF1Q9UBV8 284 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-209ENST00000504627 PRSS46E5RG02 174 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 BRI3O95415 125 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 REG1AP05451 166 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 DLK1P80370 383 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 ARL16Q0P5N6 197 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 ATP6V1FQ16864 119 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 TTC9CQ8N5M4 171 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 STOML3Q8TAV4 291 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 BSCL2Q96G97 398 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 TMEM147Q9BVK8 224 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 SMIM3Q9BZL3 60 aa13.77□□□□□ -0.21
SQSTM1-209ENST00000504627 BORCS7-ASMTA0A0B4J1R7 106 aa13.76□□□□□ -0.21
SQSTM1-209ENST00000504627 CYB5BO43169 146 aa13.76□□□□□ -0.21
SQSTM1-209ENST00000504627 JTBO76095 146 aa13.76□□□□□ -0.21
SQSTM1-209ENST00000504627 EIF5AP63241 154 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-209ENST00000504627 EXOSC2Q13868 293 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-209ENST00000504627 CLINT1Q14677 625 aa13.76□□□□□ -0.21
SQSTM1-209ENST00000504627 ZNF471Q9BX82 626 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-209ENST00000504627 CYTL1Q9NRR1 136 aa13.76□□□□□ -0.21
SQSTM1-209ENST00000504627 FNDC10F2Z333 226 aa13.75□□□□□ -0.21
SQSTM1-209ENST00000504627 SYNJ2BPP57105 145 aa13.75□□□□□ -0.21
SQSTM1-209ENST00000504627 KLF5Q13887 457 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-209ENST00000504627 RPEL1Q2QD12 228 aa13.75□□□□□ -0.21
SQSTM1-209ENST00000504627 VWC2Q2TAL6 325 aa13.75□□□□□ -0.21
SQSTM1-209ENST00000504627 ZNF343Q6P1L6 599 aa13.75□□□□□ -0.21
SQSTM1-209ENST00000504627 UBAC2Q8NBM4 344 aa13.75□□□□□ -0.21
SQSTM1-209ENST00000504627 OR9G4Q8NGQ1 327 aa13.75□□□□□ -0.21
SQSTM1-209ENST00000504627 KMT2CQ8NEZ4 4911 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-209ENST00000504627 IGLV1-51P01701 117 aa13.74□□□□□ -0.21
SQSTM1-209ENST00000504627 FRMD6-AS1P0C7T7 363 aa13.74□□□□□ -0.21
SQSTM1-209ENST00000504627 TPT1P13693 172 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-209ENST00000504627 SBSPONQ8IVN8 264 aa13.74□□□□□ -0.21
SQSTM1-209ENST00000504627 CACNG8Q8WXS5 425 aa13.74□□□□□ -0.21
SQSTM1-209ENST00000504627 PARD6GQ9BYG4 376 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-209ENST00000504627 WFDC1Q9HC57 220 aa13.74□□□□□ -0.21
SQSTM1-209ENST00000504627 UQCC1Q9NVA1 299 aa13.74□□□□□ -0.21
SQSTM1-209ENST00000504627 RPS10-NUDT3A0A1W2PQS6 291 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 TRBV12-3P01733 135 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 PRH1P02810 166 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 DEFA4P12838 97 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 GPX4P36969 197 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 MFAP2P55001 183 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 RHOGP84095 191 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 ATP5G2Q06055 141 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 KLK9Q2XQG4 91 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 RPL7L1Q6DKI1 246 aaKnown RBP13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 SLC16A13Q7RTY0 426 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 KLK9Q9UKQ9 250 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 NBEAL2Q6ZNJ1 2754 aa13.73□□□□□ -0.21
SQSTM1-209ENST00000504627 IGLV11-55A0A075B6I3 123 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 UBE2L5PA0A1B0GUS4 154 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 FAM223BA6NKX1 122 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 IFNA5P01569 189 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 HIST1H1BP16401 226 aaKnown RBP13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 OPRK1P41145 380 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 ETFRF1Q6IPR1 90 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 FAM223AQ8IWN6 122 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 ST8SIA2Q92186 375 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 SLC35E1Q96K37 410 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 ZMAT4Q9H898 229 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 DMRT1Q9Y5R6 373 aa13.72□□□□□ -0.21
SQSTM1-209ENST00000504627 SLC25A24Q6NUK1 477 aa13.71□□□□□ -0.21
SQSTM1-209ENST00000504627 C19orf35Q6ZS72 473 aa13.71□□□□□ -0.21
SQSTM1-209ENST00000504627 MISP3Q96FF7 219 aa13.71□□□□□ -0.21
SQSTM1-209ENST00000504627 ARV1Q9H2C2 271 aa13.71□□□□□ -0.21
SQSTM1-209ENST00000504627 THYN1Q9P016 225 aa13.71□□□□□ -0.21
SQSTM1-209ENST00000504627 MPDU1O75352 247 aa13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 BAP18Q8IXM2 172 aa13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 NECAP1Q8NC96 275 aa13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 PHYHIPLQ96FC7 376 aa13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 RCHY1Q96PM5 261 aa13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 FANCD2OSQ96PS1 177 aa13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 GINS3Q9BRX5 216 aa13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 WDR61Q9GZS3 305 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 FNDC4Q9H6D8 234 aaPredicted RBP13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 PEMTQ9UBM1 199 aa13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 WDR83OSQ9Y284 106 aa13.7□□□□□ -0.22
SQSTM1-209ENST00000504627 HUWE1Q7Z6Z7 4374 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 TRBV9A0A0B4J1U6 114 aa13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 SMCO3A2RU48 225 aa13.69□□□□□ -0.22
SQSTM1-209ENST00000504627 OR2J3O76001 311 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms