RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 USF2Q15853 346 aaPredicted RBP10.45□□□□□ -0.74
TRAF4-212ENST00000498540 C1orf134Q5TEV5 83 aa10.45□□□□□ -0.74
TRAF4-212ENST00000498540 GDF5OSQ5U4N7 250 aa10.45□□□□□ -0.74
TRAF4-212ENST00000498540 FAM210BQ96KR6 192 aa10.45□□□□□ -0.74
TRAF4-212ENST00000498540 NRN1Q9NPD7 142 aa10.45□□□□□ -0.74
TRAF4-212ENST00000498540 DKK2Q9UBU2 259 aa10.45□□□□□ -0.74
TRAF4-212ENST00000498540 HLA-DRB4X5D2U9 266 aa10.45□□□□□ -0.74
TRAF4-212ENST00000498540 TRAV30A0A087WSZ9 112 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 A0A0G2JRQ6 117 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 TMEM189A5PLL7 270 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 M0QYG6 137 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 HTN3P15516 51 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 RPS19P39019 145 aaKnown RBP10.44□□□□□ -0.74
TRAF4-212ENST00000498540 RND2P52198 227 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 RND3P61587 244 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 DHODHQ02127 395 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 NEDD8Q15843 81 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 RNF212Q495C1 297 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 FAM222AQ5U5X8 452 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 CROCCP3Q8IVE0 287 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 OR1S2Q8NGQ3 325 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 ENY2Q9NPA8 101 aa10.44□□□□□ -0.74
TRAF4-212ENST00000498540 IGKV3-20P01619 116 aa10.43□□□□□ -0.74
TRAF4-212ENST00000498540 PGAM2P15259 253 aa10.43□□□□□ -0.74
TRAF4-212ENST00000498540 OR10J1P30954 320 aa10.43□□□□□ -0.74
TRAF4-212ENST00000498540 PIGPP57054 158 aa10.43□□□□□ -0.74
TRAF4-212ENST00000498540 PRSS54Q6PEW0 395 aa10.43□□□□□ -0.74
TRAF4-212ENST00000498540 SIGLEC15Q6ZMC9 328 aa10.43□□□□□ -0.74
TRAF4-212ENST00000498540 Q8WTZ3 238 aa10.43□□□□□ -0.74
TRAF4-212ENST00000498540 NIPSNAP3BQ9BS92 247 aa10.43□□□□□ -0.74
TRAF4-212ENST00000498540 SEPSECSQ9HD40 501 aaKnown RBP10.43□□□□□ -0.74
TRAF4-212ENST00000498540 RFNGQ9Y644 331 aa10.43□□□□□ -0.74
TRAF4-212ENST00000498540 SMIM9A6NGZ8 99 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 C16orf90A8MZG2 172 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 CDK2AP2O75956 126 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 IL4P05112 153 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 RCVRNP35243 200 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 YPEL3P61236 119 aaPredicted RBP10.42□□□□□ -0.74
TRAF4-212ENST00000498540 TNP2Q05952 138 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 SP6Q3SY56 376 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 SNX29P2Q8IUI4 249 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 MAPKAPK5-AS1Q8N8E1 139 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 YTHDF1Q9BYJ9 559 aaKnown RBP10.42□□□□□ -0.74
TRAF4-212ENST00000498540 SCPEP1Q9HB40 452 aa10.42□□□□□ -0.74
TRAF4-212ENST00000498540 C3orf85A0A1B0GTC6 90 aa10.41□□□□□ -0.74
TRAF4-212ENST00000498540 RPS10-NUDT3A0A1W2PQS6 291 aa10.41□□□□□ -0.74
TRAF4-212ENST00000498540 BUB3O43684 328 aa10.41□□□□□ -0.74
TRAF4-212ENST00000498540 NKX2-1P43699 371 aaPredicted RBP10.41□□□□□ -0.74
TRAF4-212ENST00000498540 TRIM16LQ309B1 348 aa10.41□□□□□ -0.74
TRAF4-212ENST00000498540 TMEM88Q6PEY1 159 aa10.41□□□□□ -0.74
TRAF4-212ENST00000498540 LHFPL1Q86WI0 220 aa10.41□□□□□ -0.74
TRAF4-212ENST00000498540 ZNF709Q8N972 641 aa10.41□□□□□ -0.74
TRAF4-212ENST00000498540 ZNF486Q96H40 463 aaPredicted RBP10.41□□□□□ -0.74
TRAF4-212ENST00000498540 TEX48A0A1B0GUV7 120 aa10.4□□□□□ -0.74
TRAF4-212ENST00000498540 ATG12O94817 140 aa10.4□□□□□ -0.74
TRAF4-212ENST00000498540 NXPH3O95157 252 aa10.4□□□□□ -0.74
TRAF4-212ENST00000498540 SLC25A4P12235 298 aa10.4□□□□□ -0.74
TRAF4-212ENST00000498540 HTR2BP41595 481 aa10.4□□□□□ -0.74
TRAF4-212ENST00000498540 SPCS3P61009 180 aa10.4□□□□□ -0.74
TRAF4-212ENST00000498540 LSM3P62310 102 aaKnown RBP10.4□□□□□ -0.74
TRAF4-212ENST00000498540 RNASE11Q8TAA1 199 aaKnown RBP10.4□□□□□ -0.74
TRAF4-212ENST00000498540 RRNAD1Q96FB5 475 aaKnown RBP10.4□□□□□ -0.74
TRAF4-212ENST00000498540 SLC35B3Q9H1N7 401 aa10.4□□□□□ -0.74
TRAF4-212ENST00000498540 SAV1Q9H4B6 383 aaPredicted RBP10.4□□□□□ -0.74
TRAF4-212ENST00000498540 UCP1P25874 307 aa10.39□□□□□ -0.75
TRAF4-212ENST00000498540 OXA1LQ15070 435 aa10.39□□□□□ -0.75
TRAF4-212ENST00000498540 AARDQ4LEZ3 155 aa10.39□□□□□ -0.75
TRAF4-212ENST00000498540 C2orf83Q53S99 150 aa10.39□□□□□ -0.75
TRAF4-212ENST00000498540 RNASE12Q5GAN4 147 aaKnown RBP10.39□□□□□ -0.75
TRAF4-212ENST00000498540 GSG1LQ6UXU4 331 aa10.39□□□□□ -0.75
TRAF4-212ENST00000498540 TMEM170AQ8WVE7 144 aa10.39□□□□□ -0.75
TRAF4-212ENST00000498540 WDR12Q9GZL7 423 aaKnown RBP10.39□□□□□ -0.75
TRAF4-212ENST00000498540 HEYLQ9NQ87 328 aaPredicted RBP10.39□□□□□ -0.75
TRAF4-212ENST00000498540 COMMD3Q9UBI1 195 aa10.39□□□□□ -0.75
TRAF4-212ENST00000498540 YTHDF2Q9Y5A9 579 aaKnown RBP10.39□□□□□ -0.75
TRAF4-212ENST00000498540 LRP1BQ9NZR2 4599 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 LOC102723971A0A1B0GUV8 181 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 GSTZ1O43708 216 aaPredicted RBP10.38□□□□□ -0.75
TRAF4-212ENST00000498540 TOMM40O96008 361 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 FOXI2Q6ZQN5 318 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 C1orf158Q8N1D5 194 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 SLC24A4Q8NFF2 622 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 OR4B1Q8NGF8 309 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 OR51G1Q8NGK1 321 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 RNASEH2CQ8TDP1 164 aaKnown RBP10.38□□□□□ -0.75
TRAF4-212ENST00000498540 NPIPB3Q92617 1050 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 ACY3Q96HD9 319 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 LINC00052Q96N35 136 aa10.38□□□□□ -0.75
TRAF4-212ENST00000498540 SMIM31A0A1B0GVY4 71 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 APOA1P02647 267 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 RD3LP0DJH9 198 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 PSG1P11464 419 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 DAD1P61803 113 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 RNASE10Q5GAN6 216 aaKnown RBP10.37□□□□□ -0.75
TRAF4-212ENST00000498540 OR52E5Q8NH55 327 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 LHFPL5Q8TAF8 219 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 CLUHP3Q96NS8 147 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 Q9H521 79 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 COPZ2Q9P299 210 aa10.37□□□□□ -0.75
TRAF4-212ENST00000498540 KLK11Q9UBX7 282 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms