RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 LCE3CQ5T5A8 94 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 CEACAM19Q7Z692 300 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 LYG2Q86SG7 212 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 LRRTM1Q86UE6 522 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 SNX29P2Q8IUI4 249 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 OR5T1Q8NG75 326 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 MCFD2Q8NI22 146 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 SLC25A46Q96AG3 418 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 CYYR1Q96J86 154 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 MS4A10Q96PG2 267 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 OR2A7Q96R45 310 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 SDHCQ99643 169 aaPredicted RBP2.82□□□□□ -1.96
USP54-217ENST00000498213 CMSS1Q9BQ75 279 aaKnown RBP2.82□□□□□ -1.96
USP54-217ENST00000498213 FAAP24Q9BTP7 215 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 ZNF436Q9C0F3 470 aaPredicted RBP2.82□□□□□ -1.96
USP54-217ENST00000498213 ALX4Q9H161 411 aaPredicted RBP2.82□□□□□ -1.96
USP54-217ENST00000498213 PLEKHA3Q9HB20 300 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 SDHAF2Q9NX18 166 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 FKBP11Q9NYL4 201 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 CRCT1Q9UGL9 99 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 DAPK2Q9UIK4 370 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 RAB22AQ9UL26 194 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 SSR3Q9UNL2 185 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 PKHD1L1Q86WI1 4243 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 IGLV2-18A0A075B6J9 118 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 A0A0A6YYH2 397 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 TRAV1-2A0A0B4J238 106 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 TRAV39A0A0B4J263 110 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 A0A1B0GVG6 124 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 TMEM213A2RRL7 107 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 A6NJ64 397 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 C15orf61A6NNL5 157 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 MPTX1A8MV57 137 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 KBTBD11O94819 623 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 HLA-DQB1P01920 261 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 CD3GP09693 182 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 P0DMU3 169 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 FAM231AP0DMU4 169 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 FAM231CP0DMU5 169 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 SPP1P10451 314 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 MIFP14174 115 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 CTRB1P17538 263 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 EIF2B2P49770 351 aaKnown RBP2.81□□□□□ -1.96
USP54-217ENST00000498213 TAS2R31P59538 309 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 HERV-K104P61576 105 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 RPL8P62917 257 aaKnown RBP2.81□□□□□ -1.96
USP54-217ENST00000498213 CATR1Q13166 79 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 UNC119Q13432 240 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 RAB11BQ15907 218 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 ZNF79Q15937 498 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 TNXAQ16473 311 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 GUCA2BQ16661 112 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 TIMM50Q3ZCQ8 353 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 SAMD13Q5VXD3 122 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 CTRB2Q6GPI1 263 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 MORN3Q6PF18 240 aaPredicted RBP2.81□□□□□ -1.96
USP54-217ENST00000498213 C6orf201Q7Z4U5 140 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 H1FOOQ8IZA3 346 aaPredicted RBP2.81□□□□□ -1.96
USP54-217ENST00000498213 TMEM61Q8N0U2 210 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 PUSL1Q8N0Z8 303 aaKnown RBP2.81□□□□□ -1.96
USP54-217ENST00000498213 LYPD1Q8N2G4 141 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 DEFB125Q8N687 156 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 UXS1Q8NBZ7 420 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 OR5H6Q8NGV6 325 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 OR5B3Q8NH48 314 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 C11orf45Q8TAV5 145 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 RAB3CQ96E17 227 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 GINS4Q9BRT9 223 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 FAM103A1Q9BTL3 118 aaKnown RBP2.81□□□□□ -1.96
USP54-217ENST00000498213 RNF126Q9BV68 326 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 LPAR5Q9H1C0 372 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 OR2D2Q9H210 308 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 KCNK15Q9H427 330 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 BANF2Q9H503 90 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 TMEM231Q9H6L2 316 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 COMMD9Q9P000 198 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 APLNQ9ULZ1 77 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 AK6Q9Y3D8 172 aaKnown RBP2.81□□□□□ -1.96
USP54-217ENST00000498213 RBM7Q9Y580 266 aaKnown RBP2.81□□□□□ -1.96
USP54-217ENST00000498213 V9GYH0 126 aa2.81□□□□□ -1.96
USP54-217ENST00000498213 IGLV11-55A0A075B6I3 123 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 A0A075B6Q4 140 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 TMEM189A5PLL7 270 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 SMIM9A6NGZ8 99 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 IGLL5B9A064 214 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 CORTO00230 105 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 HPGDSO60760 199 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 OR2C1O95371 312 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 CRYZL1O95825 349 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 HPRT1P00492 218 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 EIF4EP06730 217 aaKnown RBP2.8□□□□□ -1.96
USP54-217ENST00000498213 FCGR3AP08637 254 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 CD7P09564 240 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 DEFA4P12838 97 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 NQO2P16083 231 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 HIST1H1DP16402 221 aaKnown RBP2.8□□□□□ -1.96
USP54-217ENST00000498213 HLA-GP17693 338 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 MYL9P24844 172 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 S100GP29377 79 aa2.8□□□□□ -1.96
USP54-217ENST00000498213 NUP62P37198 522 aaPredicted RBP2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms