RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 SNRPGP15A8MWD9 76 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 IGKV1-39P01597 117 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 IGKV1D-39P04432 117 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 OR5AC1P0C628 307 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 OR4E1P0C645 316 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 MIFP14174 115 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 FAM90A2PQ658T7 463 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 ZNF767PQ75MW2 155 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 GBGT1Q8N5D6 347 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 CELA1Q9UNI1 258 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 X6R8D5 127 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 TRAV3A0A0B4J244 114 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 IGHV7-4-1A0A0J9YVY3 117 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 ZNF705EA8MWA4 302 aaPredicted RBP11.86□□□□□ -0.51
VIM-208ENST00000497849 C16orf90A8MZG2 172 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 RBFOX2O43251 390 aaKnown RBP eCLIP11.86□□□□□ -0.51
VIM-208ENST00000497849 HPRT1P00492 218 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 G6PCP35575 357 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 SUPT4H1P63272 117 aaKnown RBP11.86□□□□□ -0.51
VIM-208ENST00000497849 C12orf74Q32Q52 190 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 TMEM128Q5BJH2 165 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 LEMD1Q68G75 181 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 SPSB3Q6PJ21 355 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 Q6ZRM9 215 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 ZNF431Q8TF32 576 aaPredicted RBP11.86□□□□□ -0.51
VIM-208ENST00000497849 NDUFAF3Q9BU61 184 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 BET1LQ9NYM9 111 aa11.86□□□□□ -0.51
VIM-208ENST00000497849 DMBT1Q9UGM3 2413 aaPredicted RBP11.86□□□□□ -0.51
VIM-208ENST00000497849 IGHV3-49A0A0A0MS15 119 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 IGHV3-21A0A0B4J1V1 117 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 SSNA1O43805 119 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 KRASP01116 189 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 SERPINE2P07093 398 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 VAMP1P23763 118 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 DHODHQ02127 395 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 PPP1R1AQ13522 171 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 IZUMO4Q1ZYL8 232 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 TMEM116Q8NCL8 245 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 LHFPL5Q8TAF8 219 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 GLYATL2Q8WU03 294 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 MED28Q9H204 178 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 PLEKHA2Q9HB19 425 aa11.85□□□□□ -0.51
VIM-208ENST00000497849 NACAE9PAV3 2078 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 C9orf170A2RU37 121 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 SFT2D2O95562 160 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 HRASP01112 189 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 NQO2P16083 231 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 UCP1P25874 307 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 DEFB131AP59861 70 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 DHRS2Q13268 280 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 SOHLH1Q5JUK2 328 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 SELENOHQ8IZQ5 122 aaKnown RBP11.84□□□□□ -0.51
VIM-208ENST00000497849 DMBX1Q8NFW5 382 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 OR10W1Q8NGF6 305 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 SCARB1Q8WTV0 552 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 CHAC2Q8WUX2 184 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 NSG2Q9Y328 171 aa11.84□□□□□ -0.51
VIM-208ENST00000497849 IGHV3OR16-13A0A075B7E8 117 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 IGHV3-74A0A0B4J1X5 117 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 PFDN1O60925 122 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 IFNA10P01566 189 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 IGKV1-5P01602 117 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 TRAPPC2P0DI81 140 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 TRAPPC2BP0DI82 140 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 RRAS2P62070 204 aaPredicted RBP11.83□□□□□ -0.52
VIM-208ENST00000497849 FAM24BQ8N5W8 94 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 ATP6V0BQ99437 205 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 SRSF8Q9BRL6 282 aaKnown RBP11.83□□□□□ -0.52
VIM-208ENST00000497849 TMEM222Q9H0R3 208 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 SCRT2Q9NQ03 307 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 TMEM140Q9NV12 185 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 C21orf62Q9NYP8 219 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 COMMD9Q9P000 198 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 KCNIP3Q9Y2W7 256 aa11.83□□□□□ -0.52
VIM-208ENST00000497849 A0A0G2JRQ6 117 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 UPK2O00526 184 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 CTSGP08311 255 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 ANXA3P12429 323 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 C4BPBP20851 252 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 ERVK-16P61578 105 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 WT1-ASQ06250 92 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 POU2AF1Q16633 256 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 C1orf134Q5TEV5 83 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 SLC25A24Q6NUK1 477 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 C12orf45Q8N5I9 185 aaPredicted RBP11.82□□□□□ -0.52
VIM-208ENST00000497849 MITD1Q8WV92 249 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 SEC22AQ96IW7 307 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 OR10C1Q96KK4 312 aa11.82□□□□□ -0.52
VIM-208ENST00000497849 MARCH11A6NNE9 402 aa11.81□□□□□ -0.52
VIM-208ENST00000497849 CDS2O95674 445 aa11.81□□□□□ -0.52
VIM-208ENST00000497849 TNP2Q05952 138 aa11.81□□□□□ -0.52
VIM-208ENST00000497849 FCN2Q15485 313 aa11.81□□□□□ -0.52
VIM-208ENST00000497849 TMEM268Q5VZI3 342 aa11.81□□□□□ -0.52
VIM-208ENST00000497849 TCF24Q7RTU0 167 aa11.81□□□□□ -0.52
VIM-208ENST00000497849 TRPT1Q86TN4 253 aaKnown RBP11.81□□□□□ -0.52
VIM-208ENST00000497849 UBAC2Q8NBM4 344 aa11.81□□□□□ -0.52
VIM-208ENST00000497849 COQ8AQ8NI60 647 aa11.81□□□□□ -0.52
VIM-208ENST00000497849 COMMD5Q9GZQ3 224 aa11.81□□□□□ -0.52
VIM-208ENST00000497849 FAM212BQ9NTI7 297 aaPredicted RBP11.81□□□□□ -0.52
VIM-208ENST00000497849 A0A0B4J2A0 478 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms