RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 A0A087WW49 117 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 RNF222A6NCQ9 220 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 CCL24O00175 119 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 BMPR1BO00238 502 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 NUPL2O15504 423 aaKnown RBP9.43□□□□□ -0.9
SDC1-206ENST00000482879 TGOLN2O43493 480 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 CTSGP08311 255 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 OR10J1P30954 320 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 KRTAP21-3Q3LHN1 58 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 ZFP69Q49AA0 526 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 SPSB3Q6PJ21 355 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 TMEM144Q7Z5S9 345 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 RAX2Q96IS3 184 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 DUX3Q96PT4 197 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 CHRDL1Q9BU40 450 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 TMEM147Q9BVK8 224 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 NPVFQ9HCQ7 196 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 UQCC1Q9NVA1 299 aa9.43□□□□□ -0.9
SDC1-206ENST00000482879 ZFP92A6NM28 416 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 LINC01619G3V211 115 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 GGCTO75223 188 aaKnown RBP9.42□□□□□ -0.9
SDC1-206ENST00000482879 SCGB2A1O75556 95 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 OR2C1O95371 312 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 IGLC1P0CG04 106 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 ADMP35318 185 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 ZNF616Q08AN1 781 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 TIGITQ495A1 244 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 HYLS1Q96M11 299 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 FBXL17Q9UF56 701 aa9.42□□□□□ -0.9
SDC1-206ENST00000482879 IGHV3-35A0A0C4DH35 117 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 UBE2L5PA0A1B0GUS4 154 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 DFFBO76075 338 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 IGKV1-17P01599 117 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 ZP3P21754 424 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 MYCNOSP40205 109 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 EIF2B2P49770 351 aaKnown RBP9.41□□□□□ -0.9
SDC1-206ENST00000482879 OR2F1Q13607 317 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 RPEL1Q2QD12 228 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 VWC2Q2TAL6 325 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 TEPPQ6URK8 271 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 TREML4Q6UXN2 200 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 THAP8Q8NA92 274 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 OR4F17Q8NGA8 305 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 OR4F4Q96R69 305 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 ATP5SQ99766 215 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 WFDC1Q9HC57 220 aa9.41□□□□□ -0.9
SDC1-206ENST00000482879 IGKV1D-37A0A075B6S9 117 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 IGKV1OR2-108A0A075B7D4 117 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 A0A0D9SG52 128 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 IFNA5P01569 189 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 CXCL2P19875 107 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 HOXD3P31249 432 aaPredicted RBP9.4□□□□□ -0.9
SDC1-206ENST00000482879 SLURP1P55000 103 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 RELQ04864 619 aaPredicted RBP9.4□□□□□ -0.9
SDC1-206ENST00000482879 ZNF345Q14585 488 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 KCNRGQ8N5I3 272 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 TRGV9Q99603 122 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 WDR83OSQ9Y284 106 aa9.4□□□□□ -0.9
SDC1-206ENST00000482879 M0QZ24 198 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 YIF1AO95070 293 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 PF4P02776 101 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 FABP1P07148 127 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 RD3LP0DJH9 198 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 FGF7P21781 194 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 YPEL3P61236 119 aaPredicted RBP9.39□□□□□ -0.91
SDC1-206ENST00000482879 ZNF90Q03938 601 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 RAB31Q13636 194 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 FHL3Q13643 280 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 FAM106AQ4KMX7 169 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 BTNL8Q6UX41 500 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 ZNF600Q6ZNG1 722 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 GPHB5Q86YW7 130 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 SCGB1C1Q8TD33 95 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 Q8WTZ3 238 aa9.39□□□□□ -0.91
SDC1-206ENST00000482879 LSM4Q9Y4Z0 139 aaKnown RBP9.39□□□□□ -0.91
SDC1-206ENST00000482879 ZNF320A2RRD8 509 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 TAAR5O14804 337 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 AGPAT2O15120 278 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 TOMM40O96008 361 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 CAMLGP49069 296 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 SYNJ2BPP57105 145 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 KLF5Q13887 457 aaPredicted RBP9.38□□□□□ -0.91
SDC1-206ENST00000482879 LGALSLQ3ZCW2 172 aaPredicted RBP9.38□□□□□ -0.91
SDC1-206ENST00000482879 CYP2G1PQ6ZSU1 146 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 TMUB2Q71RG4 321 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 MGST2Q99735 147 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 WDR61Q9GZS3 305 aaKnown RBP9.38□□□□□ -0.91
SDC1-206ENST00000482879 ARL6Q9H0F7 186 aa9.38□□□□□ -0.91
SDC1-206ENST00000482879 PUS1Q9Y606 427 aaKnown RBP eCLIP9.38□□□□□ -0.91
SDC1-206ENST00000482879 BORCS7-ASMTA0A0B4J1R7 106 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 KANTRA0A1W2PQU2 76 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 NDUFA4O00483 81 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 MPDU1O75352 247 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 TSPAN15O95858 294 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 PSG1P11464 419 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 GATA2P23769 480 aaPredicted RBP9.37□□□□□ -0.91
SDC1-206ENST00000482879 NKX2-5P52952 324 aaPredicted RBP9.37□□□□□ -0.91
SDC1-206ENST00000482879 ZNF266Q14584 549 aa9.37□□□□□ -0.91
SDC1-206ENST00000482879 RPL7L1Q6DKI1 246 aaKnown RBP9.37□□□□□ -0.91
SDC1-206ENST00000482879 TOMM20LQ6UXN7 152 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms