RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 SEC11BP0C7V7 166 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 IGLC1P0CG04 106 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 TPT1P13693 172 aaKnown RBP6.4□□□□□ -1.38
SYNE1-225ENST00000481502 ZP3P21754 424 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 RND2P52198 227 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 PLP1P60201 277 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 AKR1C1Q04828 323 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 OPCMLQ14982 345 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 TMEM95Q3KNT9 176 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 BTNL8Q6UX41 500 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 NDUFA11Q86Y39 141 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 GPHB5Q86YW7 130 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 BAP18Q8IXM2 172 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 ZNF709Q8N972 641 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 OR2G3Q8NGZ4 309 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 NPIPB3Q92617 1050 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 TAF15Q92804 592 aaKnown RBP eCLIP6.4□□□□□ -1.38
SYNE1-225ENST00000481502 MS4A10Q96PG2 267 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 GINS3Q9BRX5 216 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 KLK15Q9H2R5 256 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 CYTL1Q9NRR1 136 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 PEF1Q9UBV8 284 aaKnown RBP6.4□□□□□ -1.38
SYNE1-225ENST00000481502 PFDN2Q9UHV9 154 aa6.4□□□□□ -1.38
SYNE1-225ENST00000481502 SETD2Q9BYW2 2564 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-225ENST00000481502 ATRQ13535 2644 aa6.4□□□□□ -1.39
SYNE1-225ENST00000481502 NF1P21359 2839 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 ELOA3CA0A087WX78 387 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-225ENST00000481502 ZFP92A6NM28 416 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 UMAD1C9J7I0 102 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 F8W735 103 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-225ENST00000481502 TGOLN2O43493 480 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 OR2C1O95371 312 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 TOMM40O96008 361 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 RPLP1P05386 114 aaKnown RBP6.39□□□□□ -1.39
SYNE1-225ENST00000481502 OR10J1P30954 320 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 CAMLGP49069 296 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 RAB5CP51148 216 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 ELLP55199 621 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-225ENST00000481502 RIPPLY3P57055 190 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 CLINT1Q14677 625 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 MLANAQ16655 118 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 Q56UQ5 140 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 AWAT1Q58HT5 328 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 ZNF600Q6ZNG1 722 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 Q6ZRG5 221 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 PRIMA1Q86XR5 153 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-225ENST00000481502 BPIFCQ8NFQ6 507 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 Q8WTZ3 238 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 RNF2Q99496 336 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 CITED1Q99966 193 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 ZNF471Q9BX82 626 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-225ENST00000481502 ZFHX3Q15911 3703 aa6.39□□□□□ -1.39
SYNE1-225ENST00000481502 IGKV1D-37A0A075B6S9 117 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 IGKV1OR2-108A0A075B7D4 117 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 SMCO3A2RU48 225 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 MFSD2BA6NFX1 497 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 K7EMT4 169 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 LGALS9O00182 355 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 NDUFA4O00483 81 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 AGPAT2O15120 278 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 IGKV1-17P01599 117 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 RD3LP0DJH9 198 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 SPP1P10451 314 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 PRR20EP86478 221 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 PRR20CP86479 221 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 PRR20DP86480 221 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 PRR20BP86481 221 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 PRR20AP86496 221 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 KRTAP24-1Q3LI83 254 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 FAM106AQ4KMX7 169 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 TCTEX1D4Q5JR98 221 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 RPL7L1Q6DKI1 246 aaKnown RBP6.38□□□□□ -1.39
SYNE1-225ENST00000481502 DPPA3Q6W0C5 159 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 CYP2G1PQ6ZSU1 146 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 OR51G1Q8NGK1 321 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 LRRC20Q8TCA0 184 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 GATAD1Q8WUU5 269 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 ACY3Q96HD9 319 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 CCDC140Q96MF4 163 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 PFDN5Q99471 154 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 ZNF747Q9BV97 191 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 NPCDR1Q9BY65 106 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 WFDC1Q9HC57 220 aa6.38□□□□□ -1.39
SYNE1-225ENST00000481502 UBE2L5PA0A1B0GUS4 154 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 BOLA2-SMG1P6H3BVE0 249 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 TSPAN15O95858 294 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 CD5P06127 495 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 FGF7P21781 194 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 ADMP35318 185 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 ARL3P36405 182 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 MYCNOSP40205 109 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 ZNF616Q08AN1 781 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 FHL3Q13643 280 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 KRTAP21-3Q3LHN1 58 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 SHISA2Q6UWI4 295 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 CLEC19AQ6UXS0 136 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 C19orf35Q6ZS72 473 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 LURAP1LQ8IV03 231 aa6.37□□□□□ -1.39
SYNE1-225ENST00000481502 OR1L4Q8NGR5 311 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms