RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ABCA1O95477 2261 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 IGKV1D-17A0A075B6S4 117 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 PGPA6NDG6 321 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 P01737 135 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 ATP5L2Q7Z4Y8 100 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 DAZAP1Q96EP5 407 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 C19orf24Q9BVV8 132 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 PRNDQ9UKY0 176 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 ZNF835Q9Y2P0 537 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 GTSF1Q8WW33 167 aa15.24■□□□□ 0.03
CCDC88B-207ENST00000479965 GOSR1O95249 250 aa15.24■□□□□ 0.03
CCDC88B-207ENST00000479965 PRB4P10163 310 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-207ENST00000479965 IGHV1-2P23083 117 aa15.24■□□□□ 0.03
CCDC88B-207ENST00000479965 RPP21Q9H633 154 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-207ENST00000479965 CADP27708 2225 aa15.24■□□□□ 0.03
CCDC88B-207ENST00000479965 OR5AL1P0C617 328 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 PRCDQ00LT1 54 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 TMEM97Q5BJF2 176 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 FAM201AQ5SY85 155 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 GTF2H5Q6ZYL4 71 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 PCNX2A6NKB5 2137 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 DYSFO75923 2080 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 TEX50A0A1B0GTY4 177 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 SRRM4A7MD48 611 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 A8MWL6 223 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 ORM2P19652 201 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 CD69Q07108 199 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 MRPL32Q9BYC8 188 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 PATE3B3GLJ2 98 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 MGST3O14880 152 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 MOSP00540 346 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 PET117Q6UWS5 81 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 RBMXL3Q8N7X1 1067 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 H1FXQ92522 213 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 HSPB8Q9UJY1 196 aa15.23■□□□□ 0.03
CCDC88B-207ENST00000479965 ASPMQ8IZT6 3477 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 TMEM265A0A087WTH1 108 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 BHLHA15Q7RTS1 189 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 PDPNQ86YL7 162 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 CNEP1R1Q8N9A8 125 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 PPP1R35Q8TAP8 253 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 NPIPB3Q92617 1050 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 J3QW42 95 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 KLK10O43240 276 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 HOXC12P31275 282 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 MEOX1P50221 254 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 C1orf185Q5T7R7 199 aa15.22■□□□□ 0.03
CCDC88B-207ENST00000479965 RNASE2P10153 161 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-207ENST00000479965 PAX2Q02962 417 aa15.21■□□□□ 0.03
CCDC88B-207ENST00000479965 C2orf91Q6ZV80 131 aa15.21■□□□□ 0.03
CCDC88B-207ENST00000479965 FNDC10F2Z333 226 aa15.21■□□□□ 0.03
CCDC88B-207ENST00000479965 C6orf15Q6UXA7 325 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-207ENST00000479965 LINC00305Q7Z4B0 112 aa15.21■□□□□ 0.03
CCDC88B-207ENST00000479965 MS4A6AQ9H2W1 248 aa15.21■□□□□ 0.03
CCDC88B-207ENST00000479965 EPDR1Q9UM22 224 aa15.21■□□□□ 0.03
CCDC88B-207ENST00000479965 MED13Q9UHV7 2174 aa15.21■□□□□ 0.02
CCDC88B-207ENST00000479965 REG1BP48304 166 aa15.21■□□□□ 0.02
CCDC88B-207ENST00000479965 OR1N2Q8NGR9 330 aa15.21■□□□□ 0.02
CCDC88B-207ENST00000479965 GPR82Q96P67 336 aa15.21■□□□□ 0.02
CCDC88B-207ENST00000479965 JMJD8Q96S16 334 aa15.21■□□□□ 0.02
CCDC88B-207ENST00000479965 C1RLQ9NZP8 487 aa15.21■□□□□ 0.02
CCDC88B-207ENST00000479965 UPK2O00526 184 aa15.2■□□□□ 0.02
CCDC88B-207ENST00000479965 COX8AP10176 69 aa15.2■□□□□ 0.02
CCDC88B-207ENST00000479965 OR8A1Q8NGG7 326 aa15.2■□□□□ 0.02
CCDC88B-207ENST00000479965 NCR2O95944 276 aa15.2■□□□□ 0.02
CCDC88B-207ENST00000479965 PATE2Q6UY27 113 aa15.2■□□□□ 0.02
CCDC88B-207ENST00000479965 C5orf17Q8NAS9 161 aa15.2■□□□□ 0.02
CCDC88B-207ENST00000479965 TPPP3Q9BW30 176 aa15.2■□□□□ 0.02
CCDC88B-207ENST00000479965 CIDEAO60543 219 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 DEFB108BQ8NET1 73 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 NCOR1P1Q9H4R4 102 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 NAV3Q8IVL0 2385 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 APOHP02749 345 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 C2orf83Q53S99 150 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 FXYD5Q96DB9 178 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 C7orf69Q9H7B7 122 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 ZNF257Q9Y2Q1 563 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 K7ESF4 209 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 SAA1P0DJI8 122 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 GUSBP1Q15486 140 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 DUX4L9Q6RFH8 374 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 DCHS1Q96JQ0 3298 aa15.19■□□□□ 0.02
CCDC88B-207ENST00000479965 TRAV8-1A0A0A6YYK1 113 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 F2RL2O00254 374 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 SP9P0CG40 484 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 COL8A1P27658 744 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 RBPMS2Q6ZRY4 209 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 PSMB11A5LHX3 300 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 G3V4G9 280 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 NTN3O00634 580 aaPredicted RBP15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 GNG7O60262 68 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 SEC11AP67812 179 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 ERHP84090 104 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 NHLH1Q02575 133 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 OR10AG1Q8NH19 301 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 AP5S1Q9NUS5 200 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 RABAC1Q9UI14 185 aa15.18■□□□□ 0.02
CCDC88B-207ENST00000479965 RPL24P83731 157 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-207ENST00000479965 TM4SF20Q53R12 229 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms