RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NOXA1Q86UR1 476 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 KIR2DL5AQ8N109 375 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 OR4X1Q8NH49 305 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 KIR2DL5BQ8NHK3 375 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 PRRT1Q99946 306 aa10.39□□□□□ -0.75
UPF3A-204ENST00000475218 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.39□□□□□ -0.75
UPF3A-204ENST00000475218 A0A0J9YWU9 116 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 FABP12A6NFH5 140 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 CORTO00230 105 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 SPRY2O43597 315 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 DFFBO76075 338 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 APOC4P55056 127 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 DHODHQ02127 395 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 ZNF79Q15937 498 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 RNASE11Q8TAA1 199 aaKnown RBP10.38□□□□□ -0.75
UPF3A-204ENST00000475218 IL17DQ8TAD2 202 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 RNF183Q96D59 192 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 GALNT14Q96FL9 552 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 PDCD10Q9BUL8 212 aa10.38□□□□□ -0.75
UPF3A-204ENST00000475218 NXPH3O95157 252 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 OPRK1P41145 380 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 SUB1P53999 127 aaKnown RBP eCLIP10.37□□□□□ -0.75
UPF3A-204ENST00000475218 NMSQ5H8A3 153 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 MS4A6AQ9H2W1 248 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 RABL2AQ9UBK7 228 aaPredicted RBP10.37□□□□□ -0.75
UPF3A-204ENST00000475218 RABL2BQ9UNT1 228 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 UBE2CO00762 179 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 NKX2-5P52952 324 aaPredicted RBP10.37□□□□□ -0.75
UPF3A-204ENST00000475218 TNFRSF9Q07011 255 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 KLF9Q13886 244 aaPredicted RBP10.37□□□□□ -0.75
UPF3A-204ENST00000475218 TIGITQ495A1 244 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 C2orf83Q53S99 150 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 LYG2Q86SG7 212 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 ENKURQ8TC29 256 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 GINS3Q9BRX5 216 aa10.37□□□□□ -0.75
UPF3A-204ENST00000475218 IGLC1P0CG04 106 aa10.36□□□□□ -0.75
UPF3A-204ENST00000475218 CRYBB3P26998 211 aa10.36□□□□□ -0.75
UPF3A-204ENST00000475218 BMI1P35226 326 aa10.36□□□□□ -0.75
UPF3A-204ENST00000475218 HTR2BP41595 481 aa10.36□□□□□ -0.75
UPF3A-204ENST00000475218 BAK1Q16611 211 aa10.36□□□□□ -0.75
UPF3A-204ENST00000475218 PRSS54Q6PEW0 395 aa10.36□□□□□ -0.75
UPF3A-204ENST00000475218 IL22RA2Q969J5 263 aa10.36□□□□□ -0.75
UPF3A-204ENST00000475218 ENY2Q9NPA8 101 aa10.36□□□□□ -0.75
UPF3A-204ENST00000475218 TRIQKQ629K1 86 aa10.35□□□□□ -0.75
UPF3A-204ENST00000475218 ZNF767PQ75MW2 155 aa10.35□□□□□ -0.75
UPF3A-204ENST00000475218 LYZL2Q7Z4W2 148 aa10.35□□□□□ -0.75
UPF3A-204ENST00000475218 STPG3Q8N7X2 389 aa10.35□□□□□ -0.75
UPF3A-204ENST00000475218 HEYLQ9NQ87 328 aaPredicted RBP10.35□□□□□ -0.75
UPF3A-204ENST00000475218 U3KQE9 123 aa10.35□□□□□ -0.75
UPF3A-204ENST00000475218 C1QBP02746 253 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 RBMS2Q15434 407 aaKnown RBP10.34□□□□□ -0.75
UPF3A-204ENST00000475218 SLC24A4Q8NFF2 622 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 MCUBQ9NWR8 336 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 AGRNO00468 2067 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 NPPCP23582 126 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 RND2P52198 227 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 PYDC2Q56P42 97 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 LEMD1Q68G75 181 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 RNASEH2CQ8TDP1 164 aaKnown RBP10.34□□□□□ -0.75
UPF3A-204ENST00000475218 CSTL1Q9H114 145 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 HSPB7Q9UBY9 170 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 SCP2D1Q9UJQ7 156 aa10.34□□□□□ -0.75
UPF3A-204ENST00000475218 BIRC6Q9NR09 4857 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 TRAV2A0A0B4J234 112 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 A0A0B4J2A0 478 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 CEBPZOSA8MTT3 80 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 K7EQG2 157 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 SULT1A3P0DMM9 295 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 SULT1A4P0DMN0 295 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 AKR1C4P17516 323 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 DEFB131AP59861 70 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 SHPKQ9UHJ6 478 aa10.33□□□□□ -0.76
UPF3A-204ENST00000475218 CD5P06127 495 aa10.32□□□□□ -0.76
UPF3A-204ENST00000475218 GIG44P09565 113 aaPredicted RBP10.32□□□□□ -0.76
UPF3A-204ENST00000475218 NPY1RP25929 384 aa10.32□□□□□ -0.76
UPF3A-204ENST00000475218 P2RY1P47900 373 aa10.32□□□□□ -0.76
UPF3A-204ENST00000475218 CMC4P56277 68 aaPredicted RBP10.32□□□□□ -0.76
UPF3A-204ENST00000475218 PMS2P11Q13670 270 aa10.32□□□□□ -0.76
UPF3A-204ENST00000475218 USF2Q15853 346 aaPredicted RBP10.32□□□□□ -0.76
UPF3A-204ENST00000475218 DCANP1Q8TF63 244 aa10.32□□□□□ -0.76
UPF3A-204ENST00000475218 MARVELD1Q9BSK0 173 aa10.32□□□□□ -0.76
UPF3A-204ENST00000475218 KCNIP3Q9Y2W7 256 aa10.32□□□□□ -0.76
UPF3A-204ENST00000475218 RPS10-NUDT3A0A1W2PQS6 291 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 MPTX1A8MV57 137 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 ATF4P18848 351 aaPredicted RBP10.31□□□□□ -0.76
UPF3A-204ENST00000475218 OR10J1P30954 320 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 YPEL3P61236 119 aaPredicted RBP10.31□□□□□ -0.76
UPF3A-204ENST00000475218 PAFAH1B2P68402 229 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 SMCO1Q147U7 214 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 GLMPQ8WWB7 406 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 NPIPB3Q92617 1050 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 METTL26Q96S19 204 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 RBKSQ9H477 322 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 TRAV30A0A087WSZ9 112 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 FAM240BA0A1B0GVZ2 78 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 PLA2G10O15496 165 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 PITX3O75364 302 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 SLC25A4P12235 298 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 INPP1P49441 399 aa10.31□□□□□ -0.76
UPF3A-204ENST00000475218 CCR6P51684 374 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms