RNA–Protein interactions for RNA: ENST00000474543.5

NELFCD-204, Transcript of negative elongation factor complex member C/D, human

TSL 5

Gene NELFCD, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NELFCD-204	ENST00000474543	AMT	P48728	403 aa		11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	UBE2L3	P68036	154 aa	Known RBP	11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	SSBP2	P81877	361 aa	Predicted RBP	11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	TEX36	Q5VZQ5	186 aa		11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	NHLRC2	Q8NBF2	726 aa		11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	FAM168A	Q92567	244 aa		11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	LINC00479	Q96M42	142 aa		11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	COMMD5	Q9GZQ3	224 aa		11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	LINC00312	Q9Y6C7	94 aa		11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	TENM4	Q6N022	2769 aa		11.66	□□□□□ -0.54
NELFCD-204	ENST00000474543	IZUMO1R	A6ND01	250 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	DIRC3	C9JPN6	131 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543		H0YJW9	148 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	CA1	P00915	261 aa	Predicted RBP	11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	RPLP1	P05386	114 aa	Known RBP	11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	TNFSF4	P23510	183 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	CHRNB4	P30926	498 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	RPL8	P62917	257 aa	Known RBP	11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	ERH	P84090	104 aa	Known RBP	11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	ASPHD1	Q5U4P2	390 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	HARBI1	Q96MB7	349 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	ZNF714	Q96N38	554 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	RNF2	Q99496	336 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	APOA2	P02652	100 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	PMCH	P20382	165 aa		11.65	□□□□□ -0.54
NELFCD-204	ENST00000474543	INS-IGF2	F8WCM5	200 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	PYY	P10082	97 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	TMEM177	Q53S58	311 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	OR4B1	Q8NGF8	309 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	OR5AN1	Q8NGI8	311 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	SSBP3	Q9BWW4	388 aa	Predicted RBP	11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	NAV3	Q8IVL0	2385 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543		A6NNC1	897 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	ZNF324	O75467	553 aa	Predicted RBP	11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	APCS	P02743	223 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	USF1	P22415	310 aa	Predicted RBP	11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	CTRL	P40313	264 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	FAM27E3	Q08E93	113 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	C1orf185	Q5T7R7	199 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	NIT1	Q86X76	327 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	MBD6	Q96DN6	1003 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	FNDC4	Q9H6D8	234 aa	Predicted RBP	11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	ZNF355P	Q9NSJ1	428 aa		11.64	□□□□□ -0.55
NELFCD-204	ENST00000474543	USP9X	Q93008	2570 aa	Predicted RBP	11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	LRRK2	Q5S007	2527 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	CGB1	A6NKQ9	187 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	COX7A2P2	O60397	106 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	CCL3L1	P16619	93 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	CD40	P25942	277 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	REG1B	P48304	166 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	WT1-AS	Q06250	92 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	SLA	Q13239	276 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	C10orf113	Q5VZT2	155 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	PATE2	Q6UY27	113 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	ZNF329	Q86UD4	541 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	TSKU	Q8WUA8	353 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	FLYWCH2	Q96CP2	140 aa	Known RBP	11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	VKORC1	Q9BQB6	163 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	PAXX	Q9BUH6	204 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	GAL3ST2	Q9H3Q3	398 aa		11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	ZNF331	Q9NQX6	463 aa	Predicted RBP	11.63	□□□□□ -0.55
NELFCD-204	ENST00000474543	FCN3	O75636	299 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	REG1A	P05451	166 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	CCL8	P80075	99 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	MEF2C	Q06413	473 aa	Predicted RBP	11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	FAM231D	Q6ZW35	169 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	FAM19A2	Q8N3H0	131 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	TMEM167A	Q8TBQ9	72 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	WIPF2	Q8TF74	440 aa	Predicted RBP	11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	TMEM208	Q9BTX3	173 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	SPTBN1	Q01082	2364 aa	Known RBP	11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	IGKV1D-37	A0A075B6S9	117 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	TRAV34	A0A0B4J273	112 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543		A0A1W2PN81	502 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	FSTL3	O95633	263 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	IGHV3-48	P01763	117 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	C3orf79	P0CE67	100 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	C10orf55	Q5SWW7	151 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	OR1L4	Q8NGR5	311 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	NPIPB3	Q92617	1050 aa		11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	ZNF430	Q9H8G1	570 aa	Predicted RBP	11.62	□□□□□ -0.55
NELFCD-204	ENST00000474543	TCRBV4S1A1T	A0A5B7	111 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	NKX6-3	A6NJ46	265 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	PEX7	O00628	323 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	DLEU1	O43261	78 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	PRRX1	P54821	245 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	DIAPH2-AS1	Q14236	149 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	SPATA45	Q537H7	98 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	TMEM200B	Q69YZ2	307 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	RASL11A	Q6T310	242 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	NUDT10	Q8NFP7	164 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	OR4C13	Q8NGP0	309 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	C18orf32	Q8TCD1	76 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	NUDT11	Q96G61	164 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	TMEM68	Q96MH6	324 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	COL12A1	Q99715	3063 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	PLXNB1	O43157	2135 aa		11.61	□□□□□ -0.55
NELFCD-204	ENST00000474543	SRSF1	Q07955	248 aa	Known RBP eCLIP	11.6	□□□□□ -0.55	5e-7	■■□□□ 12.7
NELFCD-204	ENST00000474543	BATF	Q16520	125 aa		11.6	□□□□□ -0.55

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