RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SULT1A3P0DMM9 295 aa13.6□□□□□ -0.23
COL7A1-209ENST00000474432 SULT1A4P0DMN0 295 aa13.6□□□□□ -0.23
COL7A1-209ENST00000474432 RND2P52198 227 aa13.6□□□□□ -0.23
COL7A1-209ENST00000474432 PMS2P11Q13670 270 aa13.6□□□□□ -0.23
COL7A1-209ENST00000474432 LEMD1Q68G75 181 aa13.6□□□□□ -0.23
COL7A1-209ENST00000474432 HSPB7Q9UBY9 170 aa13.6□□□□□ -0.23
COL7A1-209ENST00000474432 KCNIP3Q9Y2W7 256 aa13.6□□□□□ -0.23
COL7A1-209ENST00000474432 V9GYH0 126 aa13.6□□□□□ -0.23
COL7A1-209ENST00000474432 BIRC6Q9NR09 4857 aa13.59□□□□□ -0.23
COL7A1-209ENST00000474432 A0A0B4J2A0 478 aa13.59□□□□□ -0.23
COL7A1-209ENST00000474432 CEBPZOSA8MTT3 80 aa13.59□□□□□ -0.23
COL7A1-209ENST00000474432 AKR1C4P17516 323 aa13.59□□□□□ -0.23
COL7A1-209ENST00000474432 P2RY1P47900 373 aa13.59□□□□□ -0.23
COL7A1-209ENST00000474432 YPEL3P61236 119 aaPredicted RBP13.59□□□□□ -0.23
COL7A1-209ENST00000474432 DCANP1Q8TF63 244 aa13.59□□□□□ -0.23
COL7A1-209ENST00000474432 METTL26Q96S19 204 aa13.59□□□□□ -0.23
COL7A1-209ENST00000474432 MCUBQ9NWR8 336 aa13.59□□□□□ -0.23
COL7A1-209ENST00000474432 SHPKQ9UHJ6 478 aa13.59□□□□□ -0.23
COL7A1-209ENST00000474432 RPS10-NUDT3A0A1W2PQS6 291 aa13.58□□□□□ -0.24
COL7A1-209ENST00000474432 A0A1W2PS18 150 aa13.58□□□□□ -0.24
COL7A1-209ENST00000474432 DNASE2O00115 360 aaPredicted RBP13.58□□□□□ -0.24
COL7A1-209ENST00000474432 GIG44P09565 113 aaPredicted RBP13.58□□□□□ -0.24
COL7A1-209ENST00000474432 SLC25A4P12235 298 aa13.58□□□□□ -0.24
COL7A1-209ENST00000474432 NPY1RP25929 384 aa13.58□□□□□ -0.24
COL7A1-209ENST00000474432 ZNF79Q15937 498 aa13.58□□□□□ -0.24
COL7A1-209ENST00000474432 OR1S2Q8NGQ3 325 aa13.58□□□□□ -0.24
COL7A1-209ENST00000474432 GATAD1Q8WUU5 269 aa13.58□□□□□ -0.24
COL7A1-209ENST00000474432 SCGB3A2Q96PL1 93 aa13.58□□□□□ -0.24
COL7A1-209ENST00000474432 TMEM231Q9H6L2 316 aa13.58□□□□□ -0.24
COL7A1-209ENST00000474432 CXorf65A6NEN9 183 aa13.57□□□□□ -0.24
COL7A1-209ENST00000474432 OR10J1P30954 320 aa13.57□□□□□ -0.24
COL7A1-209ENST00000474432 CCR6P51684 374 aa13.57□□□□□ -0.24
COL7A1-209ENST00000474432 RPL11P62913 178 aaKnown RBP13.57□□□□□ -0.24
COL7A1-209ENST00000474432 SMCO1Q147U7 214 aa13.57□□□□□ -0.24
COL7A1-209ENST00000474432 USF2Q15853 346 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-209ENST00000474432 CEMP1Q6PRD7 247 aaPredicted RBP13.57□□□□□ -0.24
COL7A1-209ENST00000474432 GLMPQ8WWB7 406 aa13.57□□□□□ -0.24
COL7A1-209ENST00000474432 LINC00476Q8WZB0 136 aa13.57□□□□□ -0.24
COL7A1-209ENST00000474432 NPIPB3Q92617 1050 aa13.57□□□□□ -0.24
COL7A1-209ENST00000474432 RBKSQ9H477 322 aa13.57□□□□□ -0.24
COL7A1-209ENST00000474432 RABAC1Q9UI14 185 aa13.57□□□□□ -0.24
COL7A1-209ENST00000474432 NOL3O60936 208 aaKnown RBP13.56□□□□□ -0.24
COL7A1-209ENST00000474432 PITX3O75364 302 aa13.56□□□□□ -0.24
COL7A1-209ENST00000474432 C16orf54Q6UWD8 224 aa13.56□□□□□ -0.24
COL7A1-209ENST00000474432 STXBP6Q8NFX7 210 aa13.56□□□□□ -0.24
COL7A1-209ENST00000474432 GRAMD2BQ96HH9 432 aa13.56□□□□□ -0.24
COL7A1-209ENST00000474432 RARRES2Q99969 163 aa13.56□□□□□ -0.24
COL7A1-209ENST00000474432 RBM38Q9H0Z9 239 aaKnown RBP13.56□□□□□ -0.24
COL7A1-209ENST00000474432 NUPR2A6NF83 97 aa13.55□□□□□ -0.24
COL7A1-209ENST00000474432 TRPT1Q86TN4 253 aaKnown RBP13.55□□□□□ -0.24
COL7A1-209ENST00000474432 LGI3Q8N145 548 aa13.55□□□□□ -0.24
COL7A1-209ENST00000474432 DTD1Q8TEA8 209 aa13.55□□□□□ -0.24
COL7A1-209ENST00000474432 Q8WTZ3 238 aa13.55□□□□□ -0.24
COL7A1-209ENST00000474432 CACFD1Q9UGQ2 172 aa13.55□□□□□ -0.24
COL7A1-209ENST00000474432 SCGB2A1O75556 95 aa13.54□□□□□ -0.24
COL7A1-209ENST00000474432 CA1P00915 261 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-209ENST00000474432 HNRNPCP07910 306 aaKnown RBP eCLIP13.54□□□□□ -0.24
COL7A1-209ENST00000474432 ZNF688P0C7X2 276 aa13.54□□□□□ -0.24
COL7A1-209ENST00000474432 CCDC190Q86UF4 302 aa13.54□□□□□ -0.24
COL7A1-209ENST00000474432 OR11H2Q8NH07 326 aa13.54□□□□□ -0.24
COL7A1-209ENST00000474432 ACY3Q96HD9 319 aa13.54□□□□□ -0.24
COL7A1-209ENST00000474432 U3KQ87 197 aa13.54□□□□□ -0.24
COL7A1-209ENST00000474432 IGKV1D-37A0A075B6S9 117 aa13.53□□□□□ -0.24
COL7A1-209ENST00000474432 KNCNA6PVL3 124 aa13.53□□□□□ -0.24
COL7A1-209ENST00000474432 TOMM40O96008 361 aa13.53□□□□□ -0.24
COL7A1-209ENST00000474432 IFNA10P01566 189 aa13.53□□□□□ -0.24
COL7A1-209ENST00000474432 IL4P05112 153 aa13.53□□□□□ -0.24
COL7A1-209ENST00000474432 PYDC2Q56P42 97 aa13.53□□□□□ -0.24
COL7A1-209ENST00000474432 ETFRF1Q6IPR1 90 aa13.53□□□□□ -0.24
COL7A1-209ENST00000474432 LRTM2Q8N967 370 aa13.53□□□□□ -0.24
COL7A1-209ENST00000474432 C11orf68Q9H3H3 251 aaKnown RBP13.53□□□□□ -0.24
COL7A1-209ENST00000474432 BUB3O43684 328 aa13.52□□□□□ -0.25
COL7A1-209ENST00000474432 PSG1P11464 419 aa13.52□□□□□ -0.25
COL7A1-209ENST00000474432 SRPXP78539 464 aa13.52□□□□□ -0.25
COL7A1-209ENST00000474432 TMEM128Q5BJH2 165 aa13.52□□□□□ -0.25
COL7A1-209ENST00000474432 TMED4Q7Z7H5 227 aa13.52□□□□□ -0.25
COL7A1-209ENST00000474432 NOXA1Q86UR1 476 aa13.52□□□□□ -0.25
COL7A1-209ENST00000474432 TOMM5Q8N4H5 51 aa13.52□□□□□ -0.25
COL7A1-209ENST00000474432 TMEM217Q8N7C4 229 aa13.52□□□□□ -0.25
COL7A1-209ENST00000474432 RD3LP0DJH9 198 aa13.51□□□□□ -0.25
COL7A1-209ENST00000474432 ANXA3P12429 323 aa13.51□□□□□ -0.25
COL7A1-209ENST00000474432 C4BPBP20851 252 aa13.51□□□□□ -0.25
COL7A1-209ENST00000474432 FAUP35544 74 aaKnown RBP13.51□□□□□ -0.25
COL7A1-209ENST00000474432 GAMTQ14353 236 aa13.51□□□□□ -0.25
COL7A1-209ENST00000474432 STHQ8IWL8 128 aa13.51□□□□□ -0.25
COL7A1-209ENST00000474432 PHLDA1Q8WV24 401 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-209ENST00000474432 NARS2Q96I59 477 aaKnown RBP13.51□□□□□ -0.25
COL7A1-209ENST00000474432 DUXBA0A1W2PPF3 345 aa13.5□□□□□ -0.25
COL7A1-209ENST00000474432 HELTA6NFD8 242 aa13.5□□□□□ -0.25
COL7A1-209ENST00000474432 DEFB4AO15263 64 aa13.5□□□□□ -0.25
COL7A1-209ENST00000474432 AP3S2P59780 193 aa13.5□□□□□ -0.25
COL7A1-209ENST00000474432 NANOS2P60321 138 aaKnown RBP13.5□□□□□ -0.25
COL7A1-209ENST00000474432 DHRS2Q13268 280 aa13.5□□□□□ -0.25
COL7A1-209ENST00000474432 Q8NAQ8 132 aa13.5□□□□□ -0.25
COL7A1-209ENST00000474432 OR51G1Q8NGK1 321 aa13.5□□□□□ -0.25
COL7A1-209ENST00000474432 OR1S1Q8NH92 325 aa13.5□□□□□ -0.25
COL7A1-209ENST00000474432 KMT2AQ03164 3969 aa13.49□□□□□ -0.25
COL7A1-209ENST00000474432 FAM90A26D6RGX4 464 aa13.49□□□□□ -0.25
COL7A1-209ENST00000474432 LY6G6CO95867 125 aa13.49□□□□□ -0.25
COL7A1-209ENST00000474432 SLC25A6P12236 298 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms