RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 BLNKQ8WV28 456 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 SSBP3Q9BWW4 388 aaPredicted RBP15.3■□□□□ 0.04
VIM-203ENST00000469543 TP53TG3Q9ULZ0 132 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 A0A1W2PN81 502 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 A0A1W2PRD5 423 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 A0A1W2PRF3 423 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 A0A1W2PRM7 423 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 C9JCJ5 164 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 ZNF137PP52743 207 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 GNG5P63218 68 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 MRPL41Q8IXM3 137 aaKnown RBP15.3■□□□□ 0.04
VIM-203ENST00000469543 FBXL15Q9H469 300 aa15.3■□□□□ 0.04
VIM-203ENST00000469543 IGHV1-3A0A0C4DH29 117 aa15.29■□□□□ 0.04
VIM-203ENST00000469543 TAS2R45P59539 299 aa15.29■□□□□ 0.04
VIM-203ENST00000469543 KIAA1644Q3SXP7 199 aa15.29■□□□□ 0.04
VIM-203ENST00000469543 OR1B1Q8NGR6 318 aa15.29■□□□□ 0.04
VIM-203ENST00000469543 SERTAD4Q9NUC0 356 aa15.29■□□□□ 0.04
VIM-203ENST00000469543 PPIAL4CA0A0B4J2A2 164 aa15.29■□□□□ 0.04
VIM-203ENST00000469543 TCRBV4S1A1TA0A5B7 111 aa15.29■□□□□ 0.04
VIM-203ENST00000469543 BUB1B-PAK6H3BSN5 160 aa15.29■□□□□ 0.04
VIM-203ENST00000469543 PPIAL4GP0DN37 164 aa15.29■□□□□ 0.04
VIM-203ENST00000469543 FSTL3O95633 263 aa15.28■□□□□ 0.04
VIM-203ENST00000469543 MC5RP33032 325 aa15.28■□□□□ 0.04
VIM-203ENST00000469543 ZNF672Q499Z4 452 aaPredicted RBP15.28■□□□□ 0.04
VIM-203ENST00000469543 ZNF664Q8N3J9 261 aa15.28■□□□□ 0.04
VIM-203ENST00000469543 GBGT1Q8N5D6 347 aa15.28■□□□□ 0.04
VIM-203ENST00000469543 OR1L6Q8NGR2 347 aa15.28■□□□□ 0.04
VIM-203ENST00000469543 MRPL18Q9H0U6 180 aaKnown RBP15.28■□□□□ 0.04
VIM-203ENST00000469543 FBLN7Q53RD9 439 aa15.28■□□□□ 0.04
VIM-203ENST00000469543 PNKDQ8N490 385 aa15.28■□□□□ 0.04
VIM-203ENST00000469543 TNFRSF19Q9NS68 423 aa15.28■□□□□ 0.04
VIM-203ENST00000469543 PAXXQ9BUH6 204 aa15.27■□□□□ 0.04
VIM-203ENST00000469543 ONECUT1Q9UBC0 465 aa15.27■□□□□ 0.04
VIM-203ENST00000469543 SIGLEC9Q9Y336 463 aa15.27■□□□□ 0.04
VIM-203ENST00000469543 SNURFLB1AK76 121 aa15.27■□□□□ 0.03
VIM-203ENST00000469543 LINC00310P59036 64 aa15.27■□□□□ 0.03
VIM-203ENST00000469543 ARF6P62330 175 aa15.27■□□□□ 0.03
VIM-203ENST00000469543 RPEL1Q2QD12 228 aa15.27■□□□□ 0.03
VIM-203ENST00000469543 TIGITQ495A1 244 aa15.27■□□□□ 0.03
VIM-203ENST00000469543 C8orf31Q8N9H6 132 aa15.27■□□□□ 0.03
VIM-203ENST00000469543 RNASEH2CQ8TDP1 164 aaKnown RBP15.27■□□□□ 0.03
VIM-203ENST00000469543 RPH3ALQ9UNE2 315 aa15.27■□□□□ 0.03
VIM-203ENST00000469543 HILPDAQ9Y5L2 63 aa15.27■□□□□ 0.03
VIM-203ENST00000469543 SUB1P53999 127 aaKnown RBP eCLIP15.26■□□□□ 0.032e-9■■■□□ 17.6
VIM-203ENST00000469543 ATP5IP56385 69 aaPredicted RBP15.26■□□□□ 0.03
VIM-203ENST00000469543 YPEL3P61236 119 aaPredicted RBP15.26■□□□□ 0.03
VIM-203ENST00000469543 OR4A5Q8NH83 315 aa15.26■□□□□ 0.03
VIM-203ENST00000469543 COL25A1Q9BXS0 654 aaPredicted RBP15.26■□□□□ 0.03
VIM-203ENST00000469543 AMMECR1Q9Y4X0 333 aaPredicted RBP15.26■□□□□ 0.03
VIM-203ENST00000469543 A0A1W2PRE2 83 aa15.26■□□□□ 0.03
VIM-203ENST00000469543 ISLRO14498 428 aa15.26■□□□□ 0.03
VIM-203ENST00000469543 LGALS7P47929 136 aa15.26■□□□□ 0.03
VIM-203ENST00000469543 MRPL54Q6P161 138 aaKnown RBP15.26■□□□□ 0.03
VIM-203ENST00000469543 FXYD5Q96DB9 178 aa15.26■□□□□ 0.03
VIM-203ENST00000469543 IGF2BP2-AS1Q96M15 143 aa15.26■□□□□ 0.03
VIM-203ENST00000469543 FAM103A1Q9BTL3 118 aaKnown RBP15.26■□□□□ 0.03
VIM-203ENST00000469543 INS-IGF2F8WCM5 200 aa15.25■□□□□ 0.03
VIM-203ENST00000469543 RPL27AP46776 148 aaKnown RBP15.25■□□□□ 0.03
VIM-203ENST00000469543 PRR27Q6MZM9 219 aa15.25■□□□□ 0.03
VIM-203ENST00000469543 PPP1R27Q86WC6 154 aa15.25■□□□□ 0.03
VIM-203ENST00000469543 TMEM18Q96B42 140 aa15.25■□□□□ 0.03
VIM-203ENST00000469543 C14orf144Q96I85 54 aa15.25■□□□□ 0.03
VIM-203ENST00000469543 C19orf24Q9BVV8 132 aa15.25■□□□□ 0.03
VIM-203ENST00000469543 CLEC7AQ9BXN2 247 aa15.25■□□□□ 0.03
VIM-203ENST00000469543 CSMD2Q7Z408 3487 aa15.25■□□□□ 0.03
VIM-203ENST00000469543 IBA57Q5T440 356 aaKnown RBP15.25■□□□□ 0.03
VIM-203ENST00000469543 S4R3C0 116 aa15.25■□□□□ 0.03
VIM-203ENST00000469543 CA7P43166 264 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 RAB4BP61018 213 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 ADORA2A-AS1P86434 159 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 DEFA6Q01524 100 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 FAM71F2Q6NXP2 309 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 BTF3L4Q96K17 158 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 CRYGBP07316 175 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 PRRX1P54821 245 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 KLRD1Q13241 179 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 ZNF329Q86UD4 541 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 RPEQ96AT9 228 aa15.24■□□□□ 0.03
VIM-203ENST00000469543 GCGP01275 180 aa15.23■□□□□ 0.03
VIM-203ENST00000469543 DDTP30046 118 aa15.23■□□□□ 0.03
VIM-203ENST00000469543 COMPP49747 757 aaPredicted RBP15.23■□□□□ 0.03
VIM-203ENST00000469543 SERF1AO75920 110 aa15.23■□□□□ 0.03
VIM-203ENST00000469543 KIR3DL3Q8N743 410 aa15.23■□□□□ 0.03
VIM-203ENST00000469543 MRPL32Q9BYC8 188 aaKnown RBP15.23■□□□□ 0.03
VIM-203ENST00000469543 TOX4O94842 621 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 SCGB1D1O95968 90 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 KLF17Q5JT82 389 aaPredicted RBP15.22■□□□□ 0.03
VIM-203ENST00000469543 Q71RC1 249 aaPredicted RBP15.22■□□□□ 0.03
VIM-203ENST00000469543 THAP8Q8NA92 274 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 NAT8BQ9UHF3 227 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 TEX22C9J3V5 150 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 TIMM23O14925 209 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 CRISP2P16562 243 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 PLGLAQ15195 96 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 TEX45Q8NA69 505 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 OR5R1Q8NH85 324 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 LY96Q9Y6Y9 160 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 CELSR2Q9HCU4 2923 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 CRYBG3Q68DQ2 2970 aa15.22■□□□□ 0.03
VIM-203ENST00000469543 CORTO00230 105 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms