RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 IGHV1-45A0A0A0MS14 117 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 A0A0D9SEW6 157 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 NDUFC2-KCTD14E9PQ53 114 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 TMEM262E9PQX1 116 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 UQCRQO14949 82 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 PLA2G10O15496 165 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 IGKV1-5P01602 117 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 BGLAPP02818 100 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 TCRAP04437 139 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 LINC00032P0C843 101 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 HERVK_113P61574 105 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 DEFA5Q01523 94 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 PRR4Q16378 134 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 KHDC3LQ587J8 217 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 OR8D4Q8NGM9 314 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 OR4A5Q8NH83 315 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 STAG3L4Q8TBR4 150 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 HDHD3Q9BSH5 251 aaPredicted RBP3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 PLA2G2FQ9BZM2 168 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 POLR2J2Q9GZM3 115 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 AGPAT4-IT1Q9H0P7 198 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 NAA60Q9H7X0 242 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 SLC25A22Q9H936 323 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 MRPS16Q9Y3D3 137 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 SBF1O95248 1867 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 TRAV12-2A0A075B6T6 113 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 A0A087WW49 117 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 IGHV3-16A0A0C4DH30 117 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 A0A0J9YW62 118 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 TRBV27A0A0K0K1C4 114 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 H3BQ15 152 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 NDUFB3O43676 98 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 MT-ND6P03923 174 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 HLA-DRB4P13762 266 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 ZNF823P16415 610 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 COX7A1P24310 79 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 RSPO1Q2MKA7 263 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 Q56UQ5 140 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 C10orf91Q5T1B1 145 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 C9orf153Q5TBE3 101 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 ALKAL2Q6UX46 152 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 SLC25A42Q86VD7 318 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 TEN1Q86WV5 123 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 C10orf126Q8N4M7 172 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 APCDD1LQ8NCL9 501 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 WFDC11Q8NEX6 87 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 BPIFB6Q8NFQ5 453 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 OR4B1Q8NGF8 309 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 OR4X2Q8NGF9 303 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 OR1J4Q8NGS1 313 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 FAM57AQ8TBR7 257 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 MRPS24Q96EL2 167 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 TIMM17AQ99595 171 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 SEC11CQ9BY50 192 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 SND1-IT1Q9HBX3 110 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 NPVFQ9HCQ7 196 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 C21orf62Q9NYP8 219 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 HLA-DRB4X5D2U9 266 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 ERVK-7P63135 1459 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 MAGI2Q86UL8 1455 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 CUL7Q14999 1698 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 SCN10AQ9Y5Y9 1956 aa3.45□□□□□ -1.86
CCDC88A-210ENST00000468534 TOPBP1Q92547 1522 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 GLI3P10071 1580 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 IGKV6-21A0A0C4DH24 114 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 RPL37AP8A6NKH3 93 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 KRTAP4-16G5E9R7 235 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 BUB1B-PAK6H3BSN5 160 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 TMEM256-PLSCR3K7ERE1 68 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 M0R129 80 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 NDUFB2O95178 105 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 SLC25A5P05141 298 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 CXCL1P09341 107 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 CRYGAP11844 174 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST1H2BOP23527 126 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 LMO2P25791 158 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST1H2BBP33778 126 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 SRP14P37108 136 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 CXCL5P42830 114 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST1H2BDP58876 126 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST1H2BCP62807 126 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HBBP68871 147 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 CCL20P78556 96 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 EBI3Q14213 229 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST2H2BEQ16778 126 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 CASC10Q5T4H9 136 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 AADACL3Q5VUY0 350 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 UNQ5815/PRO19632Q6UWF5 114 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 TMEM91Q6ZNR0 172 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 ZNF645Q8N7E2 425 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 NUP37Q8NFH4 326 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 OR10P1Q8NGE3 313 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 OR5D16Q8NGK9 328 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 OR5H2Q8NGV7 314 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 OTOSQ8NHW6 89 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 C10orf82Q8WW14 230 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST1H2BHQ93079 126 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST1H2BNQ99877 126 aa3.44□□□□□ -1.86
CCDC88A-210ENST00000468534 HIST1H2BMQ99879 126 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms