RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 ZANQ9Y493 2812 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 IGHV1-3A0A0C4DH29 117 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 MDFIC2A0A1B0GVS7 189 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 ZNF705FA8MVS1 300 aaPredicted RBP6.24□□□□□ -1.41
USP4-207ENST00000462673 PDE6DO43924 150 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 IGHV4-59P01825 116 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 ZNF705DP0CH99 300 aaPredicted RBP6.24□□□□□ -1.41
USP4-207ENST00000462673 ZNF705BP0CI00 300 aaPredicted RBP6.24□□□□□ -1.41
USP4-207ENST00000462673 ZNF134P52741 427 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 DLX1P56177 255 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 HES1Q14469 280 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 HERPUD1Q15011 391 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 ARSJQ5FYB0 599 aaPredicted RBP6.24□□□□□ -1.41
USP4-207ENST00000462673 TEX43Q6ZNM6 134 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 C5orf24Q7Z6I8 188 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 OR51H1Q8NH63 302 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 CMTM2Q8TAZ6 248 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 UBALD1Q8TB05 177 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 MS4A10Q96PG2 267 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 OR4F4Q96R69 305 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 TXNDC17Q9BRA2 123 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 ELOVL1Q9BW60 279 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 PRSS22Q9GZN4 317 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 VSIRQ9H7M9 311 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 TNFRSF19Q9NS68 423 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 TCF19Q9Y242 345 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 NAV3Q8IVL0 2385 aa6.24□□□□□ -1.41
USP4-207ENST00000462673 NIPBLQ6KC79 2804 aaeCLIP6.23□□□□□ -1.41
USP4-207ENST00000462673 A0A0G2JRQ6 117 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 FAM181BA6NEQ2 426 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 C17orf112F2Z3M2 114 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 PGLYRP1O75594 196 aaPredicted RBP6.23□□□□□ -1.41
USP4-207ENST00000462673 MOSP00540 346 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 APOA2P02652 100 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 TMEM11P17152 192 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 PAFAH1B2P68402 229 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 MSMO1Q15800 293 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 RTL8BQ17RB0 113 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 FAM78BQ5VT40 261 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 TOMM20LQ6UXN7 152 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 ZNF833PQ6ZTB9 187 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 TMEM144Q7Z5S9 345 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 HAPLN4Q86UW8 402 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 PRIMA1Q86XR5 153 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 ZNF439Q8NDP4 499 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 OR4B1Q8NGF8 309 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 OR4C13Q8NGP0 309 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 OR2T6Q8NHC8 308 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 ST6GALNAC6Q969X2 333 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 VAMP8Q9BV40 100 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 KCNIP2Q9NS61 270 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 TRAPPC1Q9Y5R8 145 aa6.23□□□□□ -1.41
USP4-207ENST00000462673 DSCAML1Q8TD84 2053 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 SAA2-SAA4A0A096LPE2 208 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 TMEM89A2RUT3 159 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 FAM90A9PA6NNJ1 464 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 NCBP2LA6PVI3 153 aaKnown RBP6.22□□□□□ -1.41
USP4-207ENST00000462673 TIMM23O14925 209 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 TNFSF12O43508 249 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 NDUFA7O95182 113 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 SAA2P0DJI9 122 aaPredicted RBP6.22□□□□□ -1.41
USP4-207ENST00000462673 RPL29P47914 159 aaKnown RBP6.22□□□□□ -1.41
USP4-207ENST00000462673 LGALS7P47929 136 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 CDC34P49427 236 aaPredicted RBP6.22□□□□□ -1.41
USP4-207ENST00000462673 THBS3P49746 956 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 RPL19P84098 196 aaKnown RBP6.22□□□□□ -1.41
USP4-207ENST00000462673 CATR1Q13166 79 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 LY6EQ16553 131 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 FFAR4Q5NUL3 377 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 ACSM6Q6P461 480 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 TMEM14EPQ6UXP3 125 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 C12orf54Q6X4T0 127 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 ZNF705AQ6ZN79 300 aaPredicted RBP6.22□□□□□ -1.41
USP4-207ENST00000462673 DRAM1Q8N682 238 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 ZNF645Q8N7E2 425 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 ZNF709Q8N972 641 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 TMEM37Q8WXS4 190 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 FLYWCH2Q96CP2 140 aaKnown RBP6.22□□□□□ -1.41
USP4-207ENST00000462673 DUX5Q96PT3 197 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 CIB3Q96Q77 187 aaPredicted RBP6.22□□□□□ -1.41
USP4-207ENST00000462673 OR4C12Q96R67 309 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 HSD17B10Q99714 261 aaKnown RBP6.22□□□□□ -1.41
USP4-207ENST00000462673 RASL11BQ9BPW5 248 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 MIEN1Q9BRT3 115 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 ATG101Q9BSB4 218 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 TMEM208Q9BTX3 173 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 OR1A1Q9P1Q5 309 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 WASHC3Q9Y3C0 194 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 PXMP4Q9Y6I8 212 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 ABCA2Q9BZC7 2435 aa6.22□□□□□ -1.41
USP4-207ENST00000462673 TRBV9A0A0B4J1U6 114 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 IGKV1-6A0A0C4DH72 117 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 ZNF320A2RRD8 509 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 A6NDX4 124 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 C11orf94C9JXX5 98 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 KRASP01116 189 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 IGKV1D-33P01593 117 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 IGKV1-33P01594 117 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 IGKV1-5P01602 117 aa6.21□□□□□ -1.42
USP4-207ENST00000462673 ESDP10768 282 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms