RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IGHV7-4-1A0A0J9YVY3 117 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 A0A0J9YWU9 116 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 NUPR2A6NF83 97 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 I3L2K1 104 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 CHEK1O14757 476 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 MT-CO2P00403 227 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 IGKV1-39P01597 117 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 IGKV1D-39P04432 117 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 CD5P06127 495 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 CTSDP07339 412 aaPredicted RBP5.34□□□□□ -1.55
USP54-208ENST00000461520 MT3P25713 68 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 HSPE1P61604 102 aaKnown RBP5.34□□□□□ -1.55
USP54-208ENST00000461520 NCS1P62166 190 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 ERHP84090 104 aaKnown RBP5.34□□□□□ -1.55
USP54-208ENST00000461520 LYG2Q86SG7 212 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 SNX29P2Q8IUI4 249 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 TMEM116Q8NCL8 245 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 MRGPRFQ96AM1 343 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 RNF183Q96D59 192 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 ZNF486Q96H40 463 aaPredicted RBP5.34□□□□□ -1.55
USP54-208ENST00000461520 FUNDC2Q9BWH2 189 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 RHPN1-AS1Q9BWJ2 59 aa5.34□□□□□ -1.55
USP54-208ENST00000461520 C6orf62Q9GZU0 229 aaPredicted RBP5.34□□□□□ -1.55
USP54-208ENST00000461520 NXF2Q9GZY0 626 aaKnown RBP5.34□□□□□ -1.55
USP54-208ENST00000461520 IGHV3OR16-8A0A075B7F1 116 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 TRAV14DV4A0A0A6YYC5 116 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 INS-IGF2F8WCM5 200 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 ZNF207O43670 478 aaKnown RBP5.33□□□□□ -1.56
USP54-208ENST00000461520 GNG7O60262 68 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 YIF1AO95070 293 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 ELK1P19419 428 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 RORCP51449 518 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 RND3P61587 244 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 VBP1P61758 197 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 DEFB135Q30KP9 77 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 LHFPL1Q86WI0 220 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 ARRDC1Q8N5I2 433 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 ZNF414Q96IQ9 312 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 RNF2Q99496 336 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 GINS3Q9BRX5 216 aa5.33□□□□□ -1.56
USP54-208ENST00000461520 FAM25AB3EWG3 89 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 FAM25CB3EWG5 89 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 FAM25GB3EWG6 89 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 CORTO00230 105 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 HPGDSO60760 199 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 ATG12O94817 140 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 PGAM2P15259 253 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 RPL35AP18077 110 aaKnown RBP5.32□□□□□ -1.56
USP54-208ENST00000461520 TBPP20226 339 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 SNCAP37840 140 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 NPBWR1P48145 328 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 PCP4P48539 62 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 PAFAH1B2P68402 229 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 EWSR1Q01844 656 aaKnown RBP eCLIP5.32□□□□□ -1.56
USP54-208ENST00000461520 RNASE10Q5GAN6 216 aaKnown RBP5.32□□□□□ -1.56
USP54-208ENST00000461520 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.32□□□□□ -1.56
USP54-208ENST00000461520 CEMP1Q6PRD7 247 aaPredicted RBP5.32□□□□□ -1.56
USP54-208ENST00000461520 APRG1Q8IVJ8 170 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 ZBTB8BQ8NAP8 495 aaPredicted RBP5.32□□□□□ -1.56
USP54-208ENST00000461520 DUSP18Q8NEJ0 188 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 C2CD4CQ8TF44 421 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 C15orf40Q8WUR7 153 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 AP3S1Q92572 193 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 PINX1Q96BK5 328 aaKnown RBP5.32□□□□□ -1.56
USP54-208ENST00000461520 CSTL1Q9H114 145 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 DNAH10Q8IVF4 4471 aa5.32□□□□□ -1.56
USP54-208ENST00000461520 A0A087WYN8 130 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 A0A0B4J293 547 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 C3orf85A0A1B0GTC6 90 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 MPTX1A8MV57 137 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 B3GALNT1O75752 331 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 LY6G6CO95867 125 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 IGKV1-5P01602 117 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 IGHV3-48P01763 117 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 CD3DP04234 171 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 P0C879 139 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 ZNF182P17025 639 aaPredicted RBP5.31□□□□□ -1.56
USP54-208ENST00000461520 AKR1C2P52895 323 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 SUB1P53999 127 aaKnown RBP eCLIP5.31□□□□□ -1.56
USP54-208ENST00000461520 PIGPP57054 158 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 PVRIGQ6DKI7 326 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 TOMM20LQ6UXN7 152 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 ZNF600Q6ZNG1 722 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 SLC35G3Q8N808 338 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 CCDC71LQ8N9Z2 235 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 ZFAND1Q8TCF1 268 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 GATAD1Q8WUU5 269 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 TP53RKQ96S44 253 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 PDCD10Q9BUL8 212 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 VSIRQ9H7M9 311 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 COPZ2Q9P299 210 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 KLK11Q9UBX7 282 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 MTFP1Q9UDX5 166 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 KLK5Q9Y337 293 aaPredicted RBP5.31□□□□□ -1.56
USP54-208ENST00000461520 KIAA1109Q2LD37 5005 aa5.31□□□□□ -1.56
USP54-208ENST00000461520 RYR1P21817 5038 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 IGKV3-7A0A075B6H7 116 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 IGHV3OR16-13A0A075B7E8 117 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 A0A0A0MQY5 61 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 IGHV3-49A0A0A0MS15 119 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms