RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 OR5C1Q8NGR4 320 aa13.79□□□□□ -0.2
SQSTM1-204ENST00000453046 OR1P1Q8NH06 330 aa13.79□□□□□ -0.2
SQSTM1-204ENST00000453046 F11RQ9Y624 299 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-204ENST00000453046 TENM3Q9P273 2699 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 CORTO00230 105 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 IFNA4P05014 189 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 CRYGCP07315 174 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 CTRB1P17538 263 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 SLC38A11Q08AI6 406 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 ZNF266Q14584 549 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 CTRB2Q6GPI1 263 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 OR8G2PQ6IF36 304 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 SLC51BQ86UW2 128 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 LILRB2Q8N423 598 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 RNASEH2CQ8TDP1 164 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 USMG5Q96IX5 58 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 ATP5SQ99766 215 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 GGACTQ9BVM4 153 aa13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 PEF1Q9UBV8 284 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-204ENST00000453046 PRSS46E5RG02 174 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 BRI3O95415 125 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 REG1AP05451 166 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 DLK1P80370 383 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 ARL16Q0P5N6 197 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 ATP6V1FQ16864 119 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 TTC9CQ8N5M4 171 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 STOML3Q8TAV4 291 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 BSCL2Q96G97 398 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 TMEM147Q9BVK8 224 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 SMIM3Q9BZL3 60 aa13.77□□□□□ -0.21
SQSTM1-204ENST00000453046 BORCS7-ASMTA0A0B4J1R7 106 aa13.76□□□□□ -0.21
SQSTM1-204ENST00000453046 CYB5BO43169 146 aa13.76□□□□□ -0.21
SQSTM1-204ENST00000453046 JTBO76095 146 aa13.76□□□□□ -0.21
SQSTM1-204ENST00000453046 EIF5AP63241 154 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-204ENST00000453046 EXOSC2Q13868 293 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-204ENST00000453046 CLINT1Q14677 625 aa13.76□□□□□ -0.21
SQSTM1-204ENST00000453046 ZNF471Q9BX82 626 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-204ENST00000453046 CYTL1Q9NRR1 136 aa13.76□□□□□ -0.21
SQSTM1-204ENST00000453046 FNDC10F2Z333 226 aa13.75□□□□□ -0.21
SQSTM1-204ENST00000453046 SYNJ2BPP57105 145 aa13.75□□□□□ -0.21
SQSTM1-204ENST00000453046 KLF5Q13887 457 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-204ENST00000453046 RPEL1Q2QD12 228 aa13.75□□□□□ -0.21
SQSTM1-204ENST00000453046 VWC2Q2TAL6 325 aa13.75□□□□□ -0.21
SQSTM1-204ENST00000453046 ZNF343Q6P1L6 599 aa13.75□□□□□ -0.21
SQSTM1-204ENST00000453046 UBAC2Q8NBM4 344 aa13.75□□□□□ -0.21
SQSTM1-204ENST00000453046 OR9G4Q8NGQ1 327 aa13.75□□□□□ -0.21
SQSTM1-204ENST00000453046 KMT2CQ8NEZ4 4911 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-204ENST00000453046 IGLV1-51P01701 117 aa13.74□□□□□ -0.21
SQSTM1-204ENST00000453046 FRMD6-AS1P0C7T7 363 aa13.74□□□□□ -0.21
SQSTM1-204ENST00000453046 TPT1P13693 172 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-204ENST00000453046 SBSPONQ8IVN8 264 aa13.74□□□□□ -0.21
SQSTM1-204ENST00000453046 CACNG8Q8WXS5 425 aa13.74□□□□□ -0.21
SQSTM1-204ENST00000453046 PARD6GQ9BYG4 376 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-204ENST00000453046 WFDC1Q9HC57 220 aa13.74□□□□□ -0.21
SQSTM1-204ENST00000453046 UQCC1Q9NVA1 299 aa13.74□□□□□ -0.21
SQSTM1-204ENST00000453046 RPS10-NUDT3A0A1W2PQS6 291 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 TRBV12-3P01733 135 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 PRH1P02810 166 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 DEFA4P12838 97 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 GPX4P36969 197 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 MFAP2P55001 183 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 RHOGP84095 191 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 ATP5G2Q06055 141 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 KLK9Q2XQG4 91 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 RPL7L1Q6DKI1 246 aaKnown RBP13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 SLC16A13Q7RTY0 426 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 KLK9Q9UKQ9 250 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 NBEAL2Q6ZNJ1 2754 aa13.73□□□□□ -0.21
SQSTM1-204ENST00000453046 IGLV11-55A0A075B6I3 123 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 UBE2L5PA0A1B0GUS4 154 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 FAM223BA6NKX1 122 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 IFNA5P01569 189 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 HIST1H1BP16401 226 aaKnown RBP13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 OPRK1P41145 380 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 ETFRF1Q6IPR1 90 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 FAM223AQ8IWN6 122 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 ST8SIA2Q92186 375 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 SLC35E1Q96K37 410 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 ZMAT4Q9H898 229 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 DMRT1Q9Y5R6 373 aa13.72□□□□□ -0.21
SQSTM1-204ENST00000453046 SLC25A24Q6NUK1 477 aa13.71□□□□□ -0.21
SQSTM1-204ENST00000453046 C19orf35Q6ZS72 473 aa13.71□□□□□ -0.21
SQSTM1-204ENST00000453046 MISP3Q96FF7 219 aa13.71□□□□□ -0.21
SQSTM1-204ENST00000453046 ARV1Q9H2C2 271 aa13.71□□□□□ -0.21
SQSTM1-204ENST00000453046 THYN1Q9P016 225 aa13.71□□□□□ -0.21
SQSTM1-204ENST00000453046 MPDU1O75352 247 aa13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 BAP18Q8IXM2 172 aa13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 NECAP1Q8NC96 275 aa13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 PHYHIPLQ96FC7 376 aa13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 RCHY1Q96PM5 261 aa13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 FANCD2OSQ96PS1 177 aa13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 GINS3Q9BRX5 216 aa13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 WDR61Q9GZS3 305 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 FNDC4Q9H6D8 234 aaPredicted RBP13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 PEMTQ9UBM1 199 aa13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 WDR83OSQ9Y284 106 aa13.7□□□□□ -0.22
SQSTM1-204ENST00000453046 HUWE1Q7Z6Z7 4374 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-204ENST00000453046 TRBV9A0A0B4J1U6 114 aa13.69□□□□□ -0.22
SQSTM1-204ENST00000453046 SMCO3A2RU48 225 aa13.69□□□□□ -0.22
SQSTM1-204ENST00000453046 OR2J3O76001 311 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms