RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 IGHV1-3A0A0C4DH29 117 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 SMIM27A0A1W2PRY6 76 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 BUB1B-PAK6H3BSN5 160 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 MGST1P10620 155 aaKnown RBP12.82□□□□□ -0.36
SHQ1-202ENST00000444040 CASP6P55212 293 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 TNXAQ16473 311 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 ETFRF1Q6IPR1 90 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 TNFRSF19Q9NS68 423 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 ZMAT5Q9UDW3 170 aaKnown RBP12.82□□□□□ -0.36
SHQ1-202ENST00000444040 SIAH2O43255 324 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 MOSP00540 346 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 MYCNOSP40205 109 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 PRRX1P54821 245 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 MISP3Q96FF7 219 aa12.82□□□□□ -0.36
SHQ1-202ENST00000444040 COMPP49747 757 aaPredicted RBP12.81□□□□□ -0.36
SHQ1-202ENST00000444040 Q0VG73 95 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 NHLRC2Q8NBF2 726 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 TMEM116Q8NCL8 245 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 MS4A10Q96PG2 267 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 TRGV9Q99603 122 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 INSIG2Q9Y5U4 225 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 SPTBN2O15020 2390 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 SPINK4O60575 86 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 TMEM136Q6ZRR5 245 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 MUC15Q8N387 334 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 BEND2Q8NDZ0 799 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 CLEC7AQ9BXN2 247 aa12.81□□□□□ -0.36
SHQ1-202ENST00000444040 PEX7O00628 323 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 SERF1AO75920 110 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 GRNP28799 593 aaKnown RBP12.8□□□□□ -0.36
SHQ1-202ENST00000444040 TCL1AP56279 114 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 PLXNB1O43157 2135 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 F2Z2F3 143 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 MT-ND6P03923 174 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 APELAP0DMC3 54 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 SLC35B1P78383 322 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 PAX2Q02962 417 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 WDR73Q6P4I2 378 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 TEX22C9J3V5 150 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 ORM2P19652 201 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 PAFAH1B2P68402 229 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 FBXL19-AS1Q494R0 122 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 PPP1R27Q86WC6 154 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 FAM168AQ92567 244 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 PERPQ96FX8 193 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 NAT8BQ9UHF3 227 aa12.8□□□□□ -0.36
SHQ1-202ENST00000444040 PPIAL4CA0A0B4J2A2 164 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 RBP4P02753 201 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 SNRPCP09234 159 aaKnown RBP12.79□□□□□ -0.36
SHQ1-202ENST00000444040 PPIAL4GP0DN37 164 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 RPL19P84098 196 aaKnown RBP12.79□□□□□ -0.36
SHQ1-202ENST00000444040 FAM231DQ6ZW35 169 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 OR1B1Q8NGR6 318 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 POLEQ07864 2286 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 TRAV34A0A0B4J273 112 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 SCGB1D1O95968 90 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 CA1P00915 261 aaPredicted RBP12.79□□□□□ -0.36
SHQ1-202ENST00000444040 COX19Q49B96 90 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 ASPHD1Q5U4P2 390 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 Q6ZWC4 215 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 STXBP6Q8NFX7 210 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 MBD6Q96DN6 1003 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 SERTAD4Q9NUC0 356 aa12.79□□□□□ -0.36
SHQ1-202ENST00000444040 FAM90A27PA6NNH2 459 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 TPPP2P59282 170 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 BAGE2Q86Y30 109 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 C8orf46Q8TAG6 207 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 NAGKQ9UJ70 344 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 F11RQ9Y624 299 aaKnown RBP12.78□□□□□ -0.36
SHQ1-202ENST00000444040 IGHV3-21A0A0B4J1V1 117 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 LY6LH3BQJ8 138 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 CA7P43166 264 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 RANP62826 216 aaKnown RBP12.78□□□□□ -0.36
SHQ1-202ENST00000444040 ZNF672Q499Z4 452 aaPredicted RBP12.78□□□□□ -0.36
SHQ1-202ENST00000444040 LHFPL4Q7Z7J7 247 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 NDUFAF3Q9BU61 184 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 GNB4Q9HAV0 340 aa12.78□□□□□ -0.36
SHQ1-202ENST00000444040 POLR3KQ9Y2Y1 108 aaPredicted RBP12.78□□□□□ -0.36
SHQ1-202ENST00000444040 PTPRZ1P23471 2315 aaPredicted RBP12.78□□□□□ -0.36
SHQ1-202ENST00000444040 IZUMO1RA6ND01 250 aa12.77□□□□□ -0.36
SHQ1-202ENST00000444040 CORTO00230 105 aa12.77□□□□□ -0.36
SHQ1-202ENST00000444040 AMY1AP04745 511 aa12.77□□□□□ -0.36
SHQ1-202ENST00000444040 CD33P20138 364 aa12.77□□□□□ -0.36
SHQ1-202ENST00000444040 COX7A1P24310 79 aa12.77□□□□□ -0.36
SHQ1-202ENST00000444040 GNG5P63218 68 aa12.77□□□□□ -0.36
SHQ1-202ENST00000444040 BAGE3Q86Y29 109 aa12.77□□□□□ -0.36
SHQ1-202ENST00000444040 LINC00469Q8N7U9 141 aa12.77□□□□□ -0.36
SHQ1-202ENST00000444040 C7orf69Q9H7B7 122 aa12.77□□□□□ -0.36
SHQ1-202ENST00000444040 MALRD1Q5VYJ5 2156 aa12.77□□□□□ -0.37
SHQ1-202ENST00000444040 PLP1P60201 277 aa12.77□□□□□ -0.37
SHQ1-202ENST00000444040 TMEM183BQ1AE95 376 aa12.77□□□□□ -0.37
SHQ1-202ENST00000444040 MRPL54Q6P161 138 aaKnown RBP12.77□□□□□ -0.37
SHQ1-202ENST00000444040 C22orf15Q8WYQ4 148 aa12.77□□□□□ -0.37
SHQ1-202ENST00000444040 SSBP3Q9BWW4 388 aaPredicted RBP12.77□□□□□ -0.37
SHQ1-202ENST00000444040 FBXL15Q9H469 300 aa12.77□□□□□ -0.37
SHQ1-202ENST00000444040 EPDR1Q9UM22 224 aa12.77□□□□□ -0.37
SHQ1-202ENST00000444040 RPEQ96AT9 228 aa12.76□□□□□ -0.37
SHQ1-202ENST00000444040 KIAA1644Q3SXP7 199 aa12.76□□□□□ -0.37
SHQ1-202ENST00000444040 LDLRAD2Q5SZI1 272 aa12.76□□□□□ -0.37
SHQ1-202ENST00000444040 NUDT10Q8NFP7 164 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms