RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SMCO3A2RU48 225 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 PPP5D1E7EU14 171 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 BMPR1BO00238 502 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 CTSGP08311 255 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 AKR1C1Q04828 323 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 RPEL1Q2QD12 228 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 TMEM144Q7Z5S9 345 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 AQP10Q96PS8 301 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 DUX3Q96PT4 197 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 TMEM147Q9BVK8 224 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 NPVFQ9HCQ7 196 aa12.15□□□□□ -0.46
USP40-206ENST00000443711 OR10J1P30954 320 aa12.14□□□□□ -0.47
USP40-206ENST00000443711 FHL3Q13643 280 aa12.14□□□□□ -0.47
USP40-206ENST00000443711 OR5C1Q8NGR4 320 aa12.14□□□□□ -0.47
USP40-206ENST00000443711 CHRDL1Q9BU40 450 aa12.14□□□□□ -0.47
USP40-206ENST00000443711 UQCC1Q9NVA1 299 aa12.14□□□□□ -0.47
USP40-206ENST00000443711 ZFP92A6NM28 416 aa12.13□□□□□ -0.47
USP40-206ENST00000443711 HMSDA8MTL9 139 aa12.13□□□□□ -0.47
USP40-206ENST00000443711 OR2C1O95371 312 aa12.13□□□□□ -0.47
USP40-206ENST00000443711 PF4P02776 101 aa12.13□□□□□ -0.47
USP40-206ENST00000443711 IGLC1P0CG04 106 aa12.13□□□□□ -0.47
USP40-206ENST00000443711 HOXD3P31249 432 aaPredicted RBP12.13□□□□□ -0.47
USP40-206ENST00000443711 ADMP35318 185 aa12.13□□□□□ -0.47
USP40-206ENST00000443711 RELQ04864 619 aaPredicted RBP12.13□□□□□ -0.47
USP40-206ENST00000443711 THAP8Q8NA92 274 aa12.13□□□□□ -0.47
USP40-206ENST00000443711 NEURL2Q9BR09 285 aa12.13□□□□□ -0.47
USP40-206ENST00000443711 MFFQ9GZY8 342 aa12.13□□□□□ -0.47
USP40-206ENST00000443711 ARPC5O15511 151 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 DFFBO76075 338 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 C1QBP02746 253 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 FABP1P07148 127 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 YPEL3P61236 119 aaPredicted RBP12.12□□□□□ -0.47
USP40-206ENST00000443711 CLINT1Q14677 625 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 VWC2Q2TAL6 325 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 TIGITQ495A1 244 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 FAM106AQ4KMX7 169 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 GPHB5Q86YW7 130 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 OR11H4Q8NGC9 324 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 TRGV9Q99603 122 aa12.12□□□□□ -0.47
USP40-206ENST00000443711 RNF222A6NCQ9 220 aa12.11□□□□□ -0.47
USP40-206ENST00000443711 IGKV1-17P01599 117 aa12.11□□□□□ -0.47
USP40-206ENST00000443711 AP2S1P53680 142 aaPredicted RBP12.11□□□□□ -0.47
USP40-206ENST00000443711 SLURP1P55000 103 aa12.11□□□□□ -0.47
USP40-206ENST00000443711 KLF5Q13887 457 aaPredicted RBP12.11□□□□□ -0.47
USP40-206ENST00000443711 TEPPQ6URK8 271 aa12.11□□□□□ -0.47
USP40-206ENST00000443711 TREML4Q6UXN2 200 aa12.11□□□□□ -0.47
USP40-206ENST00000443711 ZNF600Q6ZNG1 722 aa12.11□□□□□ -0.47
USP40-206ENST00000443711 ATP5SQ99766 215 aa12.11□□□□□ -0.47
USP40-206ENST00000443711 SMIM3Q9BZL3 60 aa12.11□□□□□ -0.47
USP40-206ENST00000443711 IGKV1D-37A0A075B6S9 117 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 IGKV1OR2-108A0A075B7D4 117 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 IGHV3-35A0A0C4DH35 117 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 NDUFA4O00483 81 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 PFDN1O60925 122 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 TSPAN15O95858 294 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 CD300CQ08708 224 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 OR2F1Q13607 317 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 RAB31Q13636 194 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 C1QL4Q86Z23 238 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 Q8WTZ3 238 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 HYLS1Q96M11 299 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 FBXL17Q9UF56 701 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 WDR83OSQ9Y284 106 aa12.1□□□□□ -0.47
USP40-206ENST00000443711 UBE2L5PA0A1B0GUS4 154 aa12.09□□□□□ -0.47
USP40-206ENST00000443711 YIF1AO95070 293 aa12.09□□□□□ -0.47
USP40-206ENST00000443711 IFNA5P01569 189 aa12.09□□□□□ -0.47
USP40-206ENST00000443711 RD3LP0DJH9 198 aa12.09□□□□□ -0.47
USP40-206ENST00000443711 ZFP69Q49AA0 526 aa12.09□□□□□ -0.47
USP40-206ENST00000443711 BTNL8Q6UX41 500 aa12.09□□□□□ -0.47
USP40-206ENST00000443711 DLX4Q92988 240 aaPredicted RBP12.09□□□□□ -0.47
USP40-206ENST00000443711 LSM4Q9Y4Z0 139 aaKnown RBP12.09□□□□□ -0.47
USP40-206ENST00000443711 A0A0D9SG52 128 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 ZNF320A2RRD8 509 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 LGALS9O00182 355 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 TAAR5O14804 337 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 MPDU1O75352 247 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 TOMM40O96008 361 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 EIF2B2P49770 351 aaKnown RBP12.08□□□□□ -0.48
USP40-206ENST00000443711 SYNJ2BPP57105 145 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 SELENOTP62341 195 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 ZNF345Q14585 488 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 CYP2G1PQ6ZSU1 146 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 REC114Q7Z4M0 266 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 KCNRGQ8N5I3 272 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 LINC00482Q8N8I6 264 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 WFDC1Q9HC57 220 aa12.08□□□□□ -0.48
USP40-206ENST00000443711 PUS1Q9Y606 427 aaKnown RBP eCLIP12.08□□□□□ -0.48
USP40-206ENST00000443711 OVOL1O14753 267 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 AGPAT2O15120 278 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 CFDP00746 253 aaPredicted RBP12.07□□□□□ -0.48
USP40-206ENST00000443711 PSG1P11464 419 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 FGF7P21781 194 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 CAMLGP49069 296 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 ZNF90Q03938 601 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 ZNF266Q14584 549 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 TOMM20LQ6UXN7 152 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 BPIFCQ8NFQ6 507 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 OR51G1Q8NGK1 321 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 SCGB1C1Q8TD33 95 aa12.07□□□□□ -0.48
USP40-206ENST00000443711 TMEM190Q8WZ59 177 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms