RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 GTSCR1Q86UQ5 136 aa14.07□□□□□ -0.16
SHH-204ENST00000441114 TMEM61Q8N0U2 210 aa14.07□□□□□ -0.16
SHH-204ENST00000441114 ZBTB8BQ8NAP8 495 aaPredicted RBP14.07□□□□□ -0.16
SHH-204ENST00000441114 PRKDCP78527 4128 aaKnown RBP14.06□□□□□ -0.16
SHH-204ENST00000441114 IGHV3OR16-13A0A075B7E8 117 aa14.06□□□□□ -0.16
SHH-204ENST00000441114 IGHV3-74A0A0B4J1X5 117 aa14.06□□□□□ -0.16
SHH-204ENST00000441114 C5orf51A6NDU8 294 aa14.06□□□□□ -0.16
SHH-204ENST00000441114 SSSCA1O60232 199 aa14.06□□□□□ -0.16
SHH-204ENST00000441114 ATP5IP56385 69 aaPredicted RBP14.06□□□□□ -0.16
SHH-204ENST00000441114 RBPMS2Q6ZRY4 209 aaKnown RBP14.06□□□□□ -0.16
SHH-204ENST00000441114 Q8N1Y9 231 aa14.06□□□□□ -0.16
SHH-204ENST00000441114 SMPXQ9UHP9 88 aa14.06□□□□□ -0.16
SHH-204ENST00000441114 TRAV14DV4A0A0A6YYC5 116 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 IGHV7-4-1A0A0J9YVY3 117 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 IL5P05113 134 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 OR10J1P30954 320 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 CD81P60033 236 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 TMEM116Q8NCL8 245 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 OR1S2Q8NGQ3 325 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 SLC35E1Q96K37 410 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 ASCL2Q99929 193 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 GINS3Q9BRX5 216 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 ZFAND3Q9H8U3 227 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 PSENENQ9NZ42 101 aa14.05□□□□□ -0.16
SHH-204ENST00000441114 INMT-MINDY4F8WBC2 141 aa14.04□□□□□ -0.16
SHH-204ENST00000441114 IGKV1-17P01599 117 aa14.04□□□□□ -0.16
SHH-204ENST00000441114 CD7P09564 240 aa14.04□□□□□ -0.16
SHH-204ENST00000441114 IGLC1P0CG04 106 aa14.04□□□□□ -0.16
SHH-204ENST00000441114 B9D2Q9BPU9 175 aa14.04□□□□□ -0.16
SHH-204ENST00000441114 NEURL2Q9BR09 285 aa14.04□□□□□ -0.16
SHH-204ENST00000441114 RHPN1-AS1Q9BWJ2 59 aa14.04□□□□□ -0.16
SHH-204ENST00000441114 GPN1Q9HCN4 374 aaPredicted RBP14.04□□□□□ -0.16
SHH-204ENST00000441114 STRAPQ9Y3F4 350 aaKnown RBP14.04□□□□□ -0.16
SHH-204ENST00000441114 IGHV3-66A0A0C4DH42 116 aa14.03□□□□□ -0.16
SHH-204ENST00000441114 CHEK1O14757 476 aa14.03□□□□□ -0.16
SHH-204ENST00000441114 GPX4P36969 197 aaPredicted RBP14.03□□□□□ -0.16
SHH-204ENST00000441114 GAMTQ14353 236 aa14.03□□□□□ -0.16
SHH-204ENST00000441114 Q8WTZ3 238 aa14.03□□□□□ -0.16
SHH-204ENST00000441114 APOHP02749 345 aaPredicted RBP14.02□□□□□ -0.17
SHH-204ENST00000441114 FRMD6-AS1P0C7T7 363 aa14.02□□□□□ -0.17
SHH-204ENST00000441114 IGHV4-30-4P0DP06 118 aa14.02□□□□□ -0.17
SHH-204ENST00000441114 LAMTOR1Q6IAA8 161 aa14.02□□□□□ -0.17
SHH-204ENST00000441114 GSG1LQ6UXU4 331 aa14.02□□□□□ -0.17
SHH-204ENST00000441114 RNF2Q99496 336 aa14.02□□□□□ -0.17
SHH-204ENST00000441114 RCL1Q9Y2P8 373 aaKnown RBP14.02□□□□□ -0.17
SHH-204ENST00000441114 LSM5Q9Y4Y9 91 aaKnown RBP14.02□□□□□ -0.17
SHH-204ENST00000441114 IGKV3-7A0A075B6H7 116 aa14.01□□□□□ -0.17
SHH-204ENST00000441114 TRAV25A0A0B4J276 109 aa14.01□□□□□ -0.17
SHH-204ENST00000441114 ZFP92A6NM28 416 aa14.01□□□□□ -0.17
SHH-204ENST00000441114 MBPP02686 304 aaPredicted RBP14.01□□□□□ -0.17
SHH-204ENST00000441114 NPPCP23582 126 aa14.01□□□□□ -0.17
SHH-204ENST00000441114 YPEL3P61236 119 aaPredicted RBP14.01□□□□□ -0.17
SHH-204ENST00000441114 ST8SIA2Q92186 375 aa14.01□□□□□ -0.17
SHH-204ENST00000441114 SMIM8Q96KF7 97 aa14.01□□□□□ -0.17
SHH-204ENST00000441114 C2orf50Q96LR7 162 aa14.01□□□□□ -0.17
SHH-204ENST00000441114 TUBA4BQ9H853 241 aa14.01□□□□□ -0.17
SHH-204ENST00000441114 PAX9P55771 341 aa14□□□□□ -0.17
SHH-204ENST00000441114 OR8G2PQ6IF36 304 aa14□□□□□ -0.17
SHH-204ENST00000441114 METTL26Q96S19 204 aa14□□□□□ -0.17
SHH-204ENST00000441114 RAB40CQ96S21 281 aa14□□□□□ -0.17
SHH-204ENST00000441114 WFDC10AQ9H1F0 79 aa14□□□□□ -0.17
SHH-204ENST00000441114 TGP01266 2768 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 L7N2F9 121 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 PRAF2O60831 178 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 CCNKO75909 580 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 TOMM40O96008 361 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 IL4P05112 153 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 RD3LP0DJH9 198 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 VAMP2P63027 116 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 DEFB125Q8N687 156 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 MARVELD1Q9BSK0 173 aa13.99□□□□□ -0.17
SHH-204ENST00000441114 OR11H12B2RN74 326 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 PRSS46E5RG02 174 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 K7EPK0 472 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 GOSR2O14653 212 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 TSPAN4O14817 238 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 SIX6O95475 246 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 METTL15P1P0C7V9 234 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 PSG1P11464 419 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 BMI1P35226 326 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 TFPI2P48307 235 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 S100A10P60903 97 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 ZNF90Q03938 601 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 TCF24Q7RTU0 167 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 SBSPONQ8IVN8 264 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 LILRB2Q8N423 598 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 GBGT1Q8N5D6 347 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 SPAG8Q99932 426 aaPredicted RBP13.98□□□□□ -0.17
SHH-204ENST00000441114 UBQLN2Q9UHD9 624 aa13.98□□□□□ -0.17
SHH-204ENST00000441114 IGKV1D-37A0A075B6S9 117 aa13.97□□□□□ -0.17
SHH-204ENST00000441114 SMCO3A2RU48 225 aa13.97□□□□□ -0.17
SHH-204ENST00000441114 C7orf66A4D0T2 115 aa13.97□□□□□ -0.17
SHH-204ENST00000441114 SNRPGP15A8MWD9 76 aa13.97□□□□□ -0.17
SHH-204ENST00000441114 BCAP31P51572 246 aa13.97□□□□□ -0.17
SHH-204ENST00000441114 RPL11P62913 178 aaKnown RBP13.97□□□□□ -0.17
SHH-204ENST00000441114 AKR1C1Q04828 323 aa13.97□□□□□ -0.17
SHH-204ENST00000441114 OR2F1Q13607 317 aa13.97□□□□□ -0.17
SHH-204ENST00000441114 ACOT7LQ6ZUV0 252 aa13.97□□□□□ -0.17
SHH-204ENST00000441114 OR51G1Q8NGK1 321 aa13.97□□□□□ -0.17
SHH-204ENST00000441114 NARS2Q96I59 477 aaKnown RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms