RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TMEM231Q9H6L2 316 aa11.35□□□□□ -0.59
LIMS3-201ENST00000437679 A0A1W2PS18 150 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 IGKV1-17P01599 117 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 OR4E1P0C645 316 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 IGLC1P0CG04 106 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 NPPCP23582 126 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 BTCP35070 178 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 DHRS2Q13268 280 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 C4orf46Q504U0 113 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 LINC00299Q6ZSB3 139 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 TCF24Q7RTU0 167 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 LYG2Q86SG7 212 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 Q8WTZ3 238 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 ST8SIA2Q92186 375 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 ACY3Q96HD9 319 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 NARS2Q96I59 477 aaKnown RBP11.34□□□□□ -0.59
LIMS3-201ENST00000437679 CIB3Q96Q77 187 aaPredicted RBP11.34□□□□□ -0.59
LIMS3-201ENST00000437679 VSIRQ9H7M9 311 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 UBQLN2Q9UHD9 624 aa11.34□□□□□ -0.59
LIMS3-201ENST00000437679 IGKV3-7A0A075B6H7 116 aa11.33□□□□□ -0.6
LIMS3-201ENST00000437679 LOC102724200A0A096LPH7 203 aaPredicted RBP11.33□□□□□ -0.6
LIMS3-201ENST00000437679 LYRM1O43325 122 aa11.33□□□□□ -0.6
LIMS3-201ENST00000437679 IFNA21P01568 189 aa11.33□□□□□ -0.6
LIMS3-201ENST00000437679 IAPPP10997 89 aa11.33□□□□□ -0.6
LIMS3-201ENST00000437679 ANXA7P20073 488 aaKnown RBP11.33□□□□□ -0.6
LIMS3-201ENST00000437679 YPEL3P61236 119 aaPredicted RBP11.33□□□□□ -0.6
LIMS3-201ENST00000437679 RAB11AP62491 216 aa11.33□□□□□ -0.6
LIMS3-201ENST00000437679 PAFAH1B2P68402 229 aa11.33□□□□□ -0.6
LIMS3-201ENST00000437679 NPIPB3Q92617 1050 aa11.33□□□□□ -0.6
LIMS3-201ENST00000437679 CCDC32Q9BV29 185 aa11.33□□□□□ -0.6
LIMS3-201ENST00000437679 GGTLC1Q9BX51 225 aa11.33□□□□□ -0.6
LIMS3-201ENST00000437679 NBEAL2Q6ZNJ1 2754 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 IGHV3-66A0A0C4DH42 116 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 PLA2G10O15496 165 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 SYNGR2O43760 224 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 APOHP02749 345 aaPredicted RBP11.32□□□□□ -0.6
LIMS3-201ENST00000437679 GPX4P36969 197 aaPredicted RBP11.32□□□□□ -0.6
LIMS3-201ENST00000437679 TFPI2P48307 235 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 CMC4P56277 68 aaPredicted RBP11.32□□□□□ -0.6
LIMS3-201ENST00000437679 RPL11P62913 178 aaKnown RBP11.32□□□□□ -0.6
LIMS3-201ENST00000437679 RPP30P78346 268 aaKnown RBP11.32□□□□□ -0.6
LIMS3-201ENST00000437679 FAM90A2PQ658T7 463 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 S100ZQ8WXG8 99 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 SLC35E1Q96K37 410 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 CITED4Q96RK1 184 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 FAM110AQ9BQ89 295 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 MAGT1Q9H0U3 335 aa11.32□□□□□ -0.6
LIMS3-201ENST00000437679 PAIP2BQ9ULR5 123 aaKnown RBP11.32□□□□□ -0.6
LIMS3-201ENST00000437679 A6NHS1 94 aa11.31□□□□□ -0.6
LIMS3-201ENST00000437679 ADAP1O75689 374 aa11.31□□□□□ -0.6
LIMS3-201ENST00000437679 DFFBO76075 338 aa11.31□□□□□ -0.6
LIMS3-201ENST00000437679 CRYBB3P26998 211 aa11.31□□□□□ -0.6
LIMS3-201ENST00000437679 ODF3L2Q3SX64 289 aa11.31□□□□□ -0.6
LIMS3-201ENST00000437679 GBGT1Q8N5D6 347 aa11.31□□□□□ -0.6
LIMS3-201ENST00000437679 GRAMD2BQ96HH9 432 aa11.31□□□□□ -0.6
LIMS3-201ENST00000437679 C20orf85Q9H1P6 137 aa11.31□□□□□ -0.6
LIMS3-201ENST00000437679 C3orf84H3BNL1 204 aa11.3□□□□□ -0.6
LIMS3-201ENST00000437679 DNASE2O00115 360 aaPredicted RBP11.3□□□□□ -0.6
LIMS3-201ENST00000437679 WRBO00258 174 aa11.3□□□□□ -0.6
LIMS3-201ENST00000437679 TOMM40O96008 361 aa11.3□□□□□ -0.6
LIMS3-201ENST00000437679 RD3LP0DJH9 198 aa11.3□□□□□ -0.6
LIMS3-201ENST00000437679 WFDC3Q8IUB2 231 aa11.3□□□□□ -0.6
LIMS3-201ENST00000437679 LILRB2Q8N423 598 aa11.3□□□□□ -0.6
LIMS3-201ENST00000437679 RETNQ9HD89 108 aa11.3□□□□□ -0.6
LIMS3-201ENST00000437679 ZFP92A6NM28 416 aa11.29□□□□□ -0.6
LIMS3-201ENST00000437679 TCRBP04435 133 aa11.29□□□□□ -0.6
LIMS3-201ENST00000437679 IL4P05112 153 aa11.29□□□□□ -0.6
LIMS3-201ENST00000437679 P2RY1P47900 373 aa11.29□□□□□ -0.6
LIMS3-201ENST00000437679 APOC4P55056 127 aa11.29□□□□□ -0.6
LIMS3-201ENST00000437679 GAMTQ14353 236 aa11.29□□□□□ -0.6
LIMS3-201ENST00000437679 MUC7Q8TAX7 377 aa11.29□□□□□ -0.6
LIMS3-201ENST00000437679 MS4A6AQ9H2W1 248 aa11.29□□□□□ -0.6
LIMS3-201ENST00000437679 TRAV6A0A075B6T7 132 aa11.28□□□□□ -0.6
LIMS3-201ENST00000437679 TRAV2A0A0B4J234 112 aa11.28□□□□□ -0.6
LIMS3-201ENST00000437679 MPTX1A8MV57 137 aa11.28□□□□□ -0.6
LIMS3-201ENST00000437679 FABP1P07148 127 aa11.28□□□□□ -0.6
LIMS3-201ENST00000437679 HNRNPCP07910 306 aaKnown RBP eCLIP11.28□□□□□ -0.6
LIMS3-201ENST00000437679 NKX2-1P43699 371 aaPredicted RBP11.28□□□□□ -0.6
LIMS3-201ENST00000437679 EIF2B2P49770 351 aaKnown RBP11.28□□□□□ -0.6
LIMS3-201ENST00000437679 ID3Q02535 119 aa11.28□□□□□ -0.6
LIMS3-201ENST00000437679 SPANXN5Q5MJ07 72 aa11.28□□□□□ -0.6
LIMS3-201ENST00000437679 MITD1Q8WV92 249 aa11.28□□□□□ -0.6
LIMS3-201ENST00000437679 RABAC1Q9UI14 185 aa11.28□□□□□ -0.6
LIMS3-201ENST00000437679 PSG1P11464 419 aa11.27□□□□□ -0.61
LIMS3-201ENST00000437679 USF2Q15853 346 aaPredicted RBP11.27□□□□□ -0.61
LIMS3-201ENST00000437679 MZT2BQ6NZ67 158 aa11.27□□□□□ -0.61
LIMS3-201ENST00000437679 APRG1Q8IVJ8 170 aa11.27□□□□□ -0.61
LIMS3-201ENST00000437679 OR51G1Q8NGK1 321 aa11.27□□□□□ -0.61
LIMS3-201ENST00000437679 OR4D5Q8NGN0 318 aa11.27□□□□□ -0.61
LIMS3-201ENST00000437679 MAP6D1Q9H9H5 199 aa11.27□□□□□ -0.61
LIMS3-201ENST00000437679 EDA2RQ9HAV5 297 aa11.27□□□□□ -0.61
LIMS3-201ENST00000437679 PTTG2Q9NZH5 202 aa11.27□□□□□ -0.61
LIMS3-201ENST00000437679 STRAPQ9Y3F4 350 aaKnown RBP11.27□□□□□ -0.61
LIMS3-201ENST00000437679 U3KQE9 123 aa11.27□□□□□ -0.61
LIMS3-201ENST00000437679 FAM240BA0A1B0GVZ2 78 aa11.26□□□□□ -0.61
LIMS3-201ENST00000437679 HELTA6NFD8 242 aa11.26□□□□□ -0.61
LIMS3-201ENST00000437679 H3BP45 60 aa11.26□□□□□ -0.61
LIMS3-201ENST00000437679 UBE2CO00762 179 aa11.26□□□□□ -0.61
LIMS3-201ENST00000437679 RPL35AP18077 110 aaKnown RBP11.26□□□□□ -0.61
LIMS3-201ENST00000437679 POLR2GP62487 172 aaKnown RBP eCLIP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms