RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 PAIP2BQ9ULR5 123 aaKnown RBP8.64□□□□□ -1.03
COL28A1-203ENST00000435823 SELENOKQ9Y6D0 94 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 TRAV14DV4A0A0A6YYC5 116 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 IGHV7-4-1A0A0J9YVY3 117 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 ZNF785A8K8V0 405 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 SCAF4O95104 1147 aaKnown RBP8.63□□□□□ -1.03
COL28A1-203ENST00000435823 NHLRC4P0CG21 123 aaPredicted RBP8.63□□□□□ -1.03
COL28A1-203ENST00000435823 NKX2-1P43699 371 aaPredicted RBP8.63□□□□□ -1.03
COL28A1-203ENST00000435823 RND2P52198 227 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 CD81P60033 236 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 PRSS54Q6PEW0 395 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 TOMM20LQ6UXN7 152 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 SLC16A13Q7RTY0 426 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 Q8N1Y9 231 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 TMEM116Q8NCL8 245 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 OR52B4Q8NGK2 314 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 ZNF431Q8TF32 576 aaPredicted RBP8.63□□□□□ -1.03
COL28A1-203ENST00000435823 NEURL2Q9BR09 285 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 MAGT1Q9H0U3 335 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 MRPL36Q9P0J6 103 aaKnown RBP8.63□□□□□ -1.03
COL28A1-203ENST00000435823 SMPXQ9UHP9 88 aa8.63□□□□□ -1.03
COL28A1-203ENST00000435823 PUS1Q9Y606 427 aaKnown RBP eCLIP8.63□□□□□ -1.03
COL28A1-203ENST00000435823 A8MZ25 164 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 FRMD6-AS1P0C7T7 363 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 IGHV4-30-4P0DP06 118 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 OR10J1P30954 320 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 GPX4P36969 197 aaPredicted RBP8.62□□□□□ -1.03
COL28A1-203ENST00000435823 DEFA1P59665 94 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 DEFA3P59666 94 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 IAH1Q2TAA2 248 aaPredicted RBP8.62□□□□□ -1.03
COL28A1-203ENST00000435823 TIGITQ495A1 244 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 OR1S2Q8NGQ3 325 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 ACY3Q96HD9 319 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 SLC35E1Q96K37 410 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 SEC22CQ9BRL7 303 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 TUBA4BQ9H853 241 aa8.62□□□□□ -1.03
COL28A1-203ENST00000435823 MPTX1A8MV57 137 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 CHEK1O14757 476 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 SCGB1D2O95969 90 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 CD7P09564 240 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 IGLC1P0CG04 106 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 YPEL3P61236 119 aaPredicted RBP8.61□□□□□ -1.03
COL28A1-203ENST00000435823 POLR2GP62487 172 aaKnown RBP eCLIP8.61□□□□□ -1.03
COL28A1-203ENST00000435823 ID3Q02535 119 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 SPANXN5Q5MJ07 72 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 C12orf45Q8N5I9 185 aaPredicted RBP8.61□□□□□ -1.03
COL28A1-203ENST00000435823 ZBTB8BQ8NAP8 495 aaPredicted RBP8.61□□□□□ -1.03
COL28A1-203ENST00000435823 OR4D5Q8NGN0 318 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 Q8WTZ3 238 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 NPIPB3Q92617 1050 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 NARS2Q96I59 477 aaKnown RBP8.61□□□□□ -1.03
COL28A1-203ENST00000435823 ZNF414Q96IQ9 312 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 ASCL2Q99929 193 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 SPAG8Q99932 426 aaPredicted RBP8.61□□□□□ -1.03
COL28A1-203ENST00000435823 RHPN1-AS1Q9BWJ2 59 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 ZFAND3Q9H8U3 227 aa8.61□□□□□ -1.03
COL28A1-203ENST00000435823 STRAPQ9Y3F4 350 aaKnown RBP8.61□□□□□ -1.03
COL28A1-203ENST00000435823 IGHV3-49A0A0A0MS15 119 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 A0A1W2PS18 150 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 FAM25EA8MYX2 175 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 TSPAN4O14817 238 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 IGKV1-17P01599 117 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 CD5P06127 495 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 NPPCP23582 126 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 IFITM3Q01628 133 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 LCE3BQ5TA77 95 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 METTL26Q96S19 204 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 TMEM231Q9H6L2 316 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 GPN1Q9HCN4 374 aaPredicted RBP8.6□□□□□ -1.03
COL28A1-203ENST00000435823 C19orf73Q9NVV2 129 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 GSKIPQ9P0R6 139 aa8.6□□□□□ -1.03
COL28A1-203ENST00000435823 IGHV3OR16-13A0A075B7E8 117 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 IGHV3-74A0A0B4J1X5 117 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 C5orf51A6NDU8 294 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 OR4C46A6NHA9 309 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 ZFP92A6NM28 416 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 OR11H12B2RN74 326 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 H3BP45 60 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 CCSO14618 274 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 SSSCA1O60232 199 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 IL5P05113 134 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 FABP1P07148 127 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 SBSPONQ8IVN8 264 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 RAB40CQ96S21 281 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 RNF2Q99496 336 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 PSENENQ9NZ42 101 aa8.59□□□□□ -1.03
COL28A1-203ENST00000435823 PRAF2O60831 178 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 TOMM40O96008 361 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 IL4P05112 153 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 HNRNPCP07910 306 aaKnown RBP eCLIP8.58□□□□□ -1.04
COL28A1-203ENST00000435823 RD3LP0DJH9 198 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 PAFAH1B2P68402 229 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 GAMTQ14353 236 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 GSG1LQ6UXU4 331 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 TCF24Q7RTU0 167 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 NRARPQ7Z6K4 114 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 DEFB125Q8N687 156 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 ST8SIA2Q92186 375 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 GRAMD2BQ96HH9 432 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 SMIM8Q96KF7 97 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms