RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 MAP1LC3BQ9GZQ8 125 aa3.86□□□□□ -1.79
VPS13A-207ENST00000419472 CST11Q9H112 138 aa3.86□□□□□ -1.79
VPS13A-207ENST00000419472 OR52D1Q9H346 318 aa3.86□□□□□ -1.79
VPS13A-207ENST00000419472 JPT1Q9UK76 154 aa3.86□□□□□ -1.79
VPS13A-207ENST00000419472 ODAMA1E959 279 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 SHISA9B4DS77 424 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 PIN1P1O15428 100 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 PHF1O43189 567 aaPredicted RBP3.85□□□□□ -1.79
VPS13A-207ENST00000419472 NUPR1O60356 82 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 TYMSP04818 313 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 CTSEP14091 401 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 S100GP29377 79 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 NCBP2P52298 156 aaKnown RBP eCLIP3.85□□□□□ -1.79
VPS13A-207ENST00000419472 TPPP2P59282 170 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 SMAGPQ0VAQ4 97 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 ELOCQ15369 112 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 ZNF880Q6PDB4 577 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 DPPA3Q6W0C5 159 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 TMEM61Q8N0U2 210 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 CYB561D1Q8N8Q1 229 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 ZNF709Q8N972 641 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 OR52R1Q8NGF1 315 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 RNF133Q8WVZ7 376 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 SMIM19Q96E16 107 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 ZMYND19Q96E35 227 aaPredicted RBP3.85□□□□□ -1.79
VPS13A-207ENST00000419472 OR10C1Q96KK4 312 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 J3QLW9 94 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 CSN2P05814 226 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 PPOXP50336 477 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 CXCL6P80162 114 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 TRMT12Q53H54 448 aaKnown RBP3.85□□□□□ -1.79
VPS13A-207ENST00000419472 TMEM256Q8N2U0 113 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 OR4D11Q8NGI4 311 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 OR13G1Q8NGZ3 307 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 SLC37A2Q8TED4 501 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 ARHGDIGQ99819 225 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 GTSF1LQ9H1H1 148 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 PSG8Q9UQ74 426 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 SLC25A15Q9Y619 301 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 WSB1Q9Y6I7 421 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 PI4KAP42356 2102 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 M0R1B8 84 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 SOCS3O14543 225 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 NTN1O95631 604 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 HAND1O96004 215 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 HIST1H1TP22492 207 aaPredicted RBP3.85□□□□□ -1.79
VPS13A-207ENST00000419472 RPL12P30050 165 aaKnown RBP3.85□□□□□ -1.79
VPS13A-207ENST00000419472 CCL20P78556 96 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 CDK5R1Q15078 307 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 DEFB125Q8N687 156 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 ZIC4Q8N9L1 334 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 FAM3DQ96BQ1 224 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 C2orf50Q96LR7 162 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 TBX5Q99593 518 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 ZNF442Q9H7R0 627 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 SLC7A10Q9NS82 523 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 RNF7Q9UBF6 113 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 CTSZQ9UBR2 303 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 SS18L2Q9UHA2 77 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 KCNE3Q9Y6H6 103 aa3.85□□□□□ -1.79
VPS13A-207ENST00000419472 LRP4O75096 1905 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 TMEM131Q92545 1883 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 OR6C6A6NF89 314 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 OR2T8A6NH00 312 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 PDE6DO43924 150 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 MAS1P04201 325 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 ERGP11308 486 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 OMGP23515 440 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 CMPK1P30085 196 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 CD164Q04900 197 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 AESQ08117 197 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 WDR74Q6RFH5 385 aaPredicted RBP3.84□□□□□ -1.79
VPS13A-207ENST00000419472 VN1R4Q7Z5H5 301 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 ZNF440Q8IYI8 595 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 TMEM252Q8N6L7 170 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 TCTEX1D1Q8N7M0 179 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 OR5A2Q8NGI9 324 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 CMTM2Q8TAZ6 248 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 TSPAN32Q96QS1 320 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 DEFB127Q9H1M4 99 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 ZNF257Q9Y2Q1 563 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 OTOGLQ3ZCN5 2332 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 CACNA1CQ13936 2221 aa3.84□□□□□ -1.79
VPS13A-207ENST00000419472 BORCS7-ASMTA0A0B4J1R7 106 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 MEIS3P1A6NDR6 274 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 TRAF3IP2O43734 574 aaPredicted RBP3.84□□□□□ -1.8
VPS13A-207ENST00000419472 IGLV2-11P01706 119 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 PRH1P02810 166 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 THY1P04216 161 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 HMGN2P05204 90 aaKnown RBP3.84□□□□□ -1.8
VPS13A-207ENST00000419472 CD99P14209 185 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 PYCR1P32322 319 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 PSG9Q00887 426 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 TMEM267Q0VDI3 215 aaPredicted RBP3.84□□□□□ -1.8
VPS13A-207ENST00000419472 KIAA0087Q14695 138 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 HIST3H3Q16695 136 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 DEFB133Q30KQ1 61 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 CLEC12AQ5QGZ9 265 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 CSNK1G2-AS1Q8NCQ2 148 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 OR10J6PQ8NGY7 276 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms