RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 BAP18Q8IXM2 172 aa11.04□□□□□ -0.64
SF3B1-204ENST00000414963 GNPNAT1Q96EK6 184 aaPredicted RBP11.04□□□□□ -0.64
SF3B1-204ENST00000414963 CCDC140Q96MF4 163 aa11.04□□□□□ -0.64
SF3B1-204ENST00000414963 IGKV1-17P01599 117 aa11.03□□□□□ -0.64
SF3B1-204ENST00000414963 CLEC3BP05452 202 aa11.03□□□□□ -0.64
SF3B1-204ENST00000414963 CTSGP08311 255 aa11.03□□□□□ -0.64
SF3B1-204ENST00000414963 OR10J1P30954 320 aa11.03□□□□□ -0.64
SF3B1-204ENST00000414963 CDX1P47902 265 aaPredicted RBP11.03□□□□□ -0.64
SF3B1-204ENST00000414963 SPSB3Q6PJ21 355 aa11.03□□□□□ -0.64
SF3B1-204ENST00000414963 MGST2Q99735 147 aa11.03□□□□□ -0.64
SF3B1-204ENST00000414963 SLC45A2Q9UMX9 530 aa11.03□□□□□ -0.64
SF3B1-204ENST00000414963 TIMM9Q9Y5J7 89 aa11.03□□□□□ -0.64
SF3B1-204ENST00000414963 S4R3C0 116 aa11.03□□□□□ -0.64
SF3B1-204ENST00000414963 TCRBV4S1A1TA0A5B7 111 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 ZFP92A6NM28 416 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 AGPAT2O15120 278 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 GNG7O60262 68 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 SPP1P10451 314 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 ATP6V0CP27449 155 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 RPL29P47914 159 aaKnown RBP11.02□□□□□ -0.65
SF3B1-204ENST00000414963 CAMLGP49069 296 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 YPEL3P61236 119 aaPredicted RBP11.02□□□□□ -0.65
SF3B1-204ENST00000414963 SELENOTP62341 195 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 RUNX1Q01196 453 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 Q56UQ5 140 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 CLEC19AQ6UXS0 136 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 ST8SIA2Q92186 375 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 PSMG3Q9BT73 122 aaPredicted RBP11.02□□□□□ -0.65
SF3B1-204ENST00000414963 NPCDR1Q9BY65 106 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 ATRQ13535 2644 aa11.02□□□□□ -0.65
SF3B1-204ENST00000414963 C17orf112F2Z3M2 114 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 TGOLN2O43493 480 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 SCGB2A1O75556 95 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 IGHV3-23P01764 117 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 FABP1P07148 127 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 LGALS1P09382 135 aaKnown RBP11.01□□□□□ -0.65
SF3B1-204ENST00000414963 SEC11BP0C7V7 166 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 ADMP35318 185 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 KRTAP24-1Q3LI83 254 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 CYP2G1PQ6ZSU1 146 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 ZNF709Q8N972 641 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 HSD17B11Q8NBQ5 300 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 OR2G3Q8NGZ4 309 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 PHYHIPLQ96FC7 376 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 GGTLC1Q9BX51 225 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 GNB4Q9HAV0 340 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 KCNIP2Q9NS61 270 aa11.01□□□□□ -0.65
SF3B1-204ENST00000414963 OR2T8A6NH00 312 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 I3L521 148 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 HAX1O00165 279 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 NUPL2O15504 423 aaKnown RBP11□□□□□ -0.65
SF3B1-204ENST00000414963 IGHV3-11P01762 117 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 LINC00869P0C866 280 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 CD28P10747 220 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 GPR183P32249 361 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 SERF2P84101 59 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 PRR20EP86478 221 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 PRR20CP86479 221 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 PRR20DP86480 221 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 PRR20BP86481 221 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 PRR20AP86496 221 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 ZNF90Q03938 601 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 TIGITQ495A1 244 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 EIF5AL1Q6IS14 154 aaKnown RBP11□□□□□ -0.65
SF3B1-204ENST00000414963 C4orf3Q8WVX3 66 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 RSG1Q9BU20 258 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 CHRDL1Q9BU40 450 aa11□□□□□ -0.65
SF3B1-204ENST00000414963 PEF1Q9UBV8 284 aaKnown RBP11□□□□□ -0.65
SF3B1-204ENST00000414963 TSSC4Q9Y5U2 329 aaPredicted RBP11□□□□□ -0.65
SF3B1-204ENST00000414963 TOMM40O96008 361 aa10.99□□□□□ -0.65
SF3B1-204ENST00000414963 CFDP00746 253 aaPredicted RBP10.99□□□□□ -0.65
SF3B1-204ENST00000414963 RD3LP0DJH9 198 aa10.99□□□□□ -0.65
SF3B1-204ENST00000414963 KRTAP10-3P60369 221 aa10.99□□□□□ -0.65
SF3B1-204ENST00000414963 TMEM182Q6ZP80 229 aaPredicted RBP10.99□□□□□ -0.65
SF3B1-204ENST00000414963 ZNF414Q96IQ9 312 aa10.99□□□□□ -0.65
SF3B1-204ENST00000414963 SH3BGRL3Q9H299 93 aa10.99□□□□□ -0.65
SF3B1-204ENST00000414963 SLC25A32Q9H2D1 315 aa10.99□□□□□ -0.65
SF3B1-204ENST00000414963 BMPR1BO00238 502 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 TRBV12-3P01733 135 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 PSG1P11464 419 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 ARL3P36405 182 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 PLP1P60201 277 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 AWAT1Q58HT5 328 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 PXDC1Q5TGL8 231 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 TEX261Q6UWH6 196 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 ZNF600Q6ZNG1 722 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 STPG3Q8N7X2 389 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 Q8WTZ3 238 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 CITED2Q99967 270 aaPredicted RBP10.98□□□□□ -0.65
SF3B1-204ENST00000414963 SLC39A9Q9NUM3 307 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 PXMP4Q9Y6I8 212 aa10.98□□□□□ -0.65
SF3B1-204ENST00000414963 ANKRD34BA5PLL1 514 aa10.97□□□□□ -0.65
SF3B1-204ENST00000414963 PPP5D1E7EU14 171 aa10.97□□□□□ -0.65
SF3B1-204ENST00000414963 GGCTO75223 188 aaKnown RBP10.97□□□□□ -0.65
SF3B1-204ENST00000414963 OR2C1O95371 312 aa10.97□□□□□ -0.65
SF3B1-204ENST00000414963 TSPAN15O95858 294 aa10.97□□□□□ -0.65
SF3B1-204ENST00000414963 HSPB1P04792 205 aaKnown RBP10.97□□□□□ -0.65
SF3B1-204ENST00000414963 RELQ04864 619 aaPredicted RBP10.97□□□□□ -0.65
SF3B1-204ENST00000414963 ZNF616Q08AN1 781 aa10.97□□□□□ -0.65
SF3B1-204ENST00000414963 MIC13Q5XKP0 118 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms