RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 FBXL15Q9H469 300 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 PXMP4Q9Y6I8 212 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 TTC28Q96AY4 2481 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 IGKV3-15P01624 115 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 KLRD1Q13241 179 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 ZNF56Q15929 161 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 SFTA2Q6UW10 78 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 C2orf82Q6UX34 121 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 SMIM20Q8N5G0 67 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 GVQW1Q8N7I0 195 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 MRPL20Q9BYC9 149 aaKnown RBP6.07□□□□□ -1.44
SCN9A-202ENST00000409435 PRR13Q9NZ81 148 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 HYPMO75409 117 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 TMEM50BP56557 158 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 C1orf194Q5T5A4 169 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 TMEM170AQ8WVE7 144 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 NPVFQ9HCQ7 196 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 IL36BQ9NZH7 164 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 TRBV20OR9-2A0A075B6H5 130 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 IGHV2-70DA0A0C4DH43 119 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 ADAMTSL5Q6ZMM2 481 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 WFDC11Q8NEX6 87 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 SCGB3A1Q96QR1 104 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 OVOL2Q9BRP0 275 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 GGTLC1Q9BX51 225 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 CENPVL1A0A0U1RR11 272 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 EVI2AP22794 236 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 PLNP26678 52 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 LYZL2Q7Z4W2 148 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 PHLDA3Q9Y5J5 127 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 ARID2Q68CP9 1835 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.06□□□□□ -1.44
SCN9A-202ENST00000409435 A8MXK9 166 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 GPX4P36969 197 aaPredicted RBP6.06□□□□□ -1.44
SCN9A-202ENST00000409435 RBM3P98179 157 aaKnown RBP6.06□□□□□ -1.44
SCN9A-202ENST00000409435 GGNQ86UU5 652 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 SAXO1Q8IYX7 474 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 SRSF12Q8WXF0 261 aaKnown RBP6.06□□□□□ -1.44
SCN9A-202ENST00000409435 C18orf15Q96N68 181 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 DUX3Q96PT4 197 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 FAM215AQ9Y5M1 114 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 CROCCQ5TZA2 2017 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 DNAJC13O75165 2243 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 J3KT08 172 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 OGG1O15527 345 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 DANCRP0C864 163 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 RUNX1Q01196 453 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 LINC00527Q9UJ94 153 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 DIDO1Q9BTC0 2240 aaKnown RBP6.06□□□□□ -1.44
SCN9A-202ENST00000409435 LINC01619G3V211 115 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 SAA4P35542 130 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 GAGE1Q13065 139 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 MZB1Q8WU39 189 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 RPRMQ9NS64 109 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 V9GYY9 64 aa6.06□□□□□ -1.44
SCN9A-202ENST00000409435 M0R2P5 195 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 CDC42EP2O14613 210 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 IGHV3-23P01764 117 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 CCL3L1P16619 93 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 EFNB3Q15768 340 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 GAPTQ8N292 157 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 TMEM126AQ9H061 195 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 COL4A4P53420 1690 aaPredicted RBP6.05□□□□□ -1.44
SCN9A-202ENST00000409435 ICE1Q9Y2F5 2266 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 LCTP09848 1927 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 OVOL1O14753 267 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 ZFPL1O95159 310 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 CD5P06127 495 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 SSTR5P35346 364 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 TDGF1P3P51864 188 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 FUT5Q11128 374 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 SOSTQ9BQB4 213 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 PRSS27Q9BQR3 290 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 C1QTNF4Q9BXJ3 329 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 RPUSD1Q9UJJ7 312 aaKnown RBP6.05□□□□□ -1.44
SCN9A-202ENST00000409435 DOCK8Q8NF50 2099 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 SEC16AO15027 2179 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 PTPRQQ9UMZ3 2332 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 CLPSL1A2RUU4 121 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 PPYP01298 95 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 CD24P25063 80 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 SELENOTP62341 195 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 TMEM144Q7Z5S9 345 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 SERF1AO75920 110 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 TMEM252Q8N6L7 170 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 AQP3Q92482 292 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 GPR132Q9UNW8 380 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 DPM2O94777 84 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 NDUFA3O95167 84 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 NAPSAO96009 420 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 EFNB1P98172 346 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 ZNF79Q15937 498 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 ZNF329Q86UD4 541 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 RNF182Q8N6D2 247 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 TMEM167AQ8TBQ9 72 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 IL36RNQ9UBH0 155 aa6.05□□□□□ -1.44
SCN9A-202ENST00000409435 TOMM40O96008 361 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 UBE2E1P51965 193 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 CX3CL1P78423 397 aa6.04□□□□□ -1.44
SCN9A-202ENST00000409435 DNAJC30Q96LL9 226 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms