RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 LIPFP07098 398 aa8.94□□□□□ -0.98
CCDC40-204ENST00000397545 MYOD1P15172 320 aa8.94□□□□□ -0.98
CCDC40-204ENST00000397545 SRSF4Q08170 494 aaKnown RBP8.94□□□□□ -0.98
CCDC40-204ENST00000397545 TREML4Q6UXN2 200 aa8.94□□□□□ -0.98
CCDC40-204ENST00000397545 GTF3AQ92664 365 aaKnown RBP8.94□□□□□ -0.98
CCDC40-204ENST00000397545 ANKRD11Q6UB99 2663 aaPredicted RBP8.93□□□□□ -0.98
CCDC40-204ENST00000397545 DYSFO75923 2080 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 CX3CL1P78423 397 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 DNLZQ5SXM8 178 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 HIST1H4GQ99525 98 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 LIME1Q9H400 295 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 MAP1LC3AQ9H492 121 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 SEPSECSQ9HD40 501 aaKnown RBP8.93□□□□□ -0.98
CCDC40-204ENST00000397545 TLN1Q9Y490 2541 aaKnown RBP8.93□□□□□ -0.98
CCDC40-204ENST00000397545 FREM1Q5H8C1 2179 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 TMEM50AO95807 157 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 PRSS2P07478 247 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 DNM1P46Q6ZS02 220 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 LINC01551Q86U37 167 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 C1orf147Q96MC9 270 aaPredicted RBP8.93□□□□□ -0.98
CCDC40-204ENST00000397545 C2CD3Q4AC94 2353 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 A0A1B0GUT8 65 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 LYNX1G3V0Z9 82 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 LYNX1P0DP58 116 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 GGTLC1Q9BX51 225 aa8.93□□□□□ -0.98
CCDC40-204ENST00000397545 ZFP36L1Q07352 338 aaKnown RBP8.92□□□□□ -0.98
CCDC40-204ENST00000397545 SPSB3Q6PJ21 355 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 TMEM160Q9NX00 188 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 ADAMTS9Q9P2N4 1935 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 TRBV20OR9-2A0A075B6H5 130 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 IGKV3-20P01619 116 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 CSRP1P21291 193 aaKnown RBP8.92□□□□□ -0.98
CCDC40-204ENST00000397545 GPR82Q96P67 336 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 GP6Q9HCN6 339 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 SPRR3Q9UBC9 169 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 A0A1B0GUS0 222 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 UPK2O00526 184 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 LCN12Q6JVE5 192 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 ZNF414Q96IQ9 312 aa8.92□□□□□ -0.98
CCDC40-204ENST00000397545 C15orf61A6NNL5 157 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 NDUFA2O43678 99 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 YPEL1O60688 119 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 LY6EQ16553 131 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 YPEL2Q96QA6 119 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 PHLDA3Q9Y5J5 127 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 NUP210LQ5VU65 1888 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 EML6Q6ZMW3 1958 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 IL18BPO95998 194 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 LYRM7Q5U5X0 104 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 PRELID3AQ96N28 172 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 METTL26Q96S19 204 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 RNF115Q9Y4L5 304 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 FAM106CPP0CH98 169 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 BSPH1Q075Z2 132 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 Q0VFX4 171 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 FAM90A2PQ658T7 463 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 FAM53AQ6NSI3 398 aaPredicted RBP8.91□□□□□ -0.98
CCDC40-204ENST00000397545 AGMATQ9BSE5 352 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 Q9H3A6 140 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 RPP21Q9H633 154 aaKnown RBP8.91□□□□□ -0.98
CCDC40-204ENST00000397545 RAXQ9Y2V3 346 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 CELSR3Q9NYQ7 3312 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 IZUMO1RA6ND01 250 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 LINC00473A8K010 186 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 NPIPB11E5RHQ5 1161 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 ZNF324O75467 553 aaPredicted RBP8.91□□□□□ -0.98
CCDC40-204ENST00000397545 FOXH1O75593 365 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 ZNF124Q15973 351 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 FAM74A4Q5TZK3 123 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 TMEM42Q69YG0 159 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 SLX1AQ9BQ83 275 aa8.91□□□□□ -0.98
CCDC40-204ENST00000397545 TRAV1-1A0A0B4J248 108 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 IGKV1-6A0A0C4DH72 117 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 A1L4Q6 167 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 WIPF3A6NGB9 483 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 MLANAQ16655 118 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 TMEM14EPQ6UXP3 125 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 CACNG8Q8WXS5 425 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 DMDP11532 3685 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 M0R381 172 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 GZMBP10144 247 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 TEX45Q8NA69 505 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 OR10J6PQ8NGY7 276 aa8.9□□□□□ -0.98
CCDC40-204ENST00000397545 STAG3L2P0CL84 134 aa8.9□□□□□ -0.99
CCDC40-204ENST00000397545 STAG3L3P0CL85 134 aa8.9□□□□□ -0.99
CCDC40-204ENST00000397545 PPIFP30405 207 aaKnown RBP8.9□□□□□ -0.99
CCDC40-204ENST00000397545 ATP5IP56385 69 aaPredicted RBP8.9□□□□□ -0.99
CCDC40-204ENST00000397545 CD69Q07108 199 aa8.9□□□□□ -0.99
CCDC40-204ENST00000397545 MUC3AQ02505 3323 aa8.9□□□□□ -0.99
CCDC40-204ENST00000397545 SH2D7A6NKC9 451 aaPredicted RBP8.89□□□□□ -0.99
CCDC40-204ENST00000397545 CD59P13987 128 aa8.89□□□□□ -0.99
CCDC40-204ENST00000397545 ZNF664Q8N3J9 261 aa8.89□□□□□ -0.99
CCDC40-204ENST00000397545 TMEM242Q9NWH2 141 aa8.89□□□□□ -0.99
CCDC40-204ENST00000397545 MRPS18CQ9Y3D5 142 aaKnown RBP8.89□□□□□ -0.99
CCDC40-204ENST00000397545 PRRC2CQ9Y520 2896 aaKnown RBP8.89□□□□□ -0.99
CCDC40-204ENST00000397545 LOC105371242A0A075B767 164 aa8.89□□□□□ -0.99
CCDC40-204ENST00000397545 IGKV1D-33P01593 117 aa8.89□□□□□ -0.99
CCDC40-204ENST00000397545 IGKV1-33P01594 117 aa8.89□□□□□ -0.99
CCDC40-204ENST00000397545 LYL1P12980 280 aa8.89□□□□□ -0.99
CCDC40-204ENST00000397545 SFTA2Q6UW10 78 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms