RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 RUSC1-AS1Q66K80 236 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 LCN12Q6JVE5 192 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 PRR27Q6MZM9 219 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 ATOH7Q8N100 152 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 CLEC7AQ9BXN2 247 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 NAV3Q8IVL0 2385 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 TCRBV4S1A1TA0A5B7 111 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 CORTO00230 105 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 TNFSF4P23510 183 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 CD40P25942 277 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 LHFPL4Q7Z7J7 247 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 TMEM167AQ8TBQ9 72 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 GRAMD2BQ96HH9 432 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 SGK494Q96LW2 274 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 RBM14Q96PK6 669 aaKnown RBP10.25□□□□□ -0.77
SHMT1-205ENST00000395684 SSBP4Q9BWG4 385 aaPredicted RBP10.25□□□□□ -0.77
SHMT1-205ENST00000395684 ZNF430Q9H8G1 570 aaPredicted RBP10.25□□□□□ -0.77
SHMT1-205ENST00000395684 MRPL27Q9P0M9 148 aaKnown RBP10.25□□□□□ -0.77
SHMT1-205ENST00000395684 UQCR10Q9UDW1 63 aa10.25□□□□□ -0.77
SHMT1-205ENST00000395684 GPR6P46095 362 aaPredicted RBP10.24□□□□□ -0.77
SHMT1-205ENST00000395684 PRR31Q5SQ13 230 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 COL5A1-AS1Q5SY13 56 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 TMEM200BQ69YZ2 307 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 RASL11AQ6T310 242 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 C19orf35Q6ZS72 473 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 DEFB124Q8NES8 71 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 BORCS7Q96B45 105 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 GAL3ST2Q9H3Q3 398 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 C7orf69Q9H7B7 122 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 A0A1W2PN81 502 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 FTH1P19P0C7X4 201 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 MYCNOSP40205 109 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 LINC00305Q7Z4B0 112 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 ZADH2Q8N4Q0 377 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 OR4C13Q8NGP0 309 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 OR1L4Q8NGR5 311 aa10.24□□□□□ -0.77
SHMT1-205ENST00000395684 ZNF318Q5VUA4 2279 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 CEACAM4O75871 244 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 IGLV2-23P01705 113 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 Q6ZN92 141 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 PIP4P1Q86T03 277 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 STPG4Q8N801 248 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 RITA1Q96K30 269 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 HIGD1CA8MV81 97 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 CAMPP49913 170 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 THAP8Q8NA92 274 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 TXN2Q99757 166 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 ALKBH7Q9BT30 221 aaPredicted RBP10.23□□□□□ -0.77
SHMT1-205ENST00000395684 TPSG1Q9NRR2 321 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 MGAQ8IWI9 3026 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 ROS1P08922 2347 aa10.23□□□□□ -0.77
SHMT1-205ENST00000395684 BPIFB3P59826 476 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 MEF2CQ06413 473 aaPredicted RBP10.22□□□□□ -0.77
SHMT1-205ENST00000395684 C1orf185Q5T7R7 199 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 EBLN2Q6P2I7 272 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 NKX6-3A6NJ46 265 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 C22orf46C9J442 243 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 HSBP1O75506 76 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 KLF5Q13887 457 aaPredicted RBP10.22□□□□□ -0.77
SHMT1-205ENST00000395684 RBMXL3Q8N7X1 1067 aaKnown RBP10.22□□□□□ -0.77
SHMT1-205ENST00000395684 OR10X1Q8NGY0 326 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 BLNKQ8WV28 456 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 TNFRSF19Q9NS68 423 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 EPDR1Q9UM22 224 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 ZFP30Q9Y2G7 519 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 PLXNB1O43157 2135 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 OTOGLQ3ZCN5 2332 aa10.22□□□□□ -0.77
SHMT1-205ENST00000395684 A0A1W2PPI3 338 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 FAM181BA6NEQ2 426 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 NDUFB8O95169 186 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 MOSP00540 346 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 ORM2P19652 201 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 MRGPRG-AS1Q2M3A8 158 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 LINC00322Q6ZN03 302 aaPredicted RBP10.21□□□□□ -0.77
SHMT1-205ENST00000395684 PDPNQ86YL7 162 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 OR4A5Q8NH83 315 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 VSTM2AQ8TAG5 236 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 ST6GALNAC6Q969X2 333 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 LAMTOR2Q9Y2Q5 125 aa10.21□□□□□ -0.77
SHMT1-205ENST00000395684 SLC25A17O43808 307 aa10.21□□□□□ -0.78
SHMT1-205ENST00000395684 CRYABP02511 175 aaKnown RBP10.21□□□□□ -0.78
SHMT1-205ENST00000395684 LINC00614P0C842 121 aa10.21□□□□□ -0.78
SHMT1-205ENST00000395684 HIST1H1EP10412 219 aaKnown RBP10.21□□□□□ -0.78
SHMT1-205ENST00000395684 HNRNPA3P51991 378 aaKnown RBP10.21□□□□□ -0.78
SHMT1-205ENST00000395684 SUB1P53999 127 aaKnown RBP eCLIP10.21□□□□□ -0.78
SHMT1-205ENST00000395684 SAP30LQ9HAJ7 183 aa10.21□□□□□ -0.78
SHMT1-205ENST00000395684 GVINP1Q7Z2Y8 2422 aa10.21□□□□□ -0.78
SHMT1-205ENST00000395684 A0A1B0GXF2 115 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 PGPA6NDG6 321 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 M0R2Z0 102 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 OR2J3O76001 311 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 TNFRSF1AP19438 455 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 UBE2G1P62253 170 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 LYPD2Q6UXB3 125 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 TCF24Q7RTU0 167 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 C11orf42Q8N5U0 333 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 KIR3DL3Q8N743 410 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 NUP37Q8NFH4 326 aa10.2□□□□□ -0.78
SHMT1-205ENST00000395684 H1FXQ92522 213 aaKnown RBP10.2□□□□□ -0.78
SHMT1-205ENST00000395684 URB1-AS1Q96HZ7 61 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms