RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 TRGV9Q99603 122 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 CLEC7AQ9BXN2 247 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 GFRA4Q9GZZ7 299 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 ASCL3Q9NQ33 180 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 TNFRSF19Q9NS68 423 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 WASHC3Q9Y3C0 194 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 IGHV2-26A0A0B4J1V2 119 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 M0R2Z0 102 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 TOMM40O96008 361 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 PYYP10082 97 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 NTF3P20783 257 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 COL8A2P25067 703 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 CD40P25942 277 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 TSPOP30536 169 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 LGALS7P47929 136 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 PLP1P60201 277 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 WT1-ASQ06250 92 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 TNXAQ16473 311 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 SSX8Q7RTT4 187 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 PIP4P1Q86T03 277 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 FAM19A2Q8N3H0 131 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 C11orf42Q8N5U0 333 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 NHLRC2Q8NBF2 726 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 C22orf15Q8WYQ4 148 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 RND1Q92730 232 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 CHCHD1Q96BP2 118 aaKnown RBP8.07□□□□□ -1.12
COL17A1-203ENST00000393211 MLST8Q9BVC4 326 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 SSBP3Q9BWW4 388 aaPredicted RBP8.07□□□□□ -1.12
COL17A1-203ENST00000393211 PRSS22Q9GZN4 317 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 FNDC4Q9H6D8 234 aaPredicted RBP8.07□□□□□ -1.12
COL17A1-203ENST00000393211 FAM215AQ9Y5M1 114 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 WDFY3Q8IZQ1 3526 aa8.07□□□□□ -1.12
COL17A1-203ENST00000393211 CFAP54Q96N23 3096 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 INTS1Q8N201 2190 aaKnown RBP8.06□□□□□ -1.12
COL17A1-203ENST00000393211 CGB1A6NKQ9 187 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 HIGD1CA8MV81 97 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 CORTO00230 105 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 CRXO43186 299 aaPredicted RBP8.06□□□□□ -1.12
COL17A1-203ENST00000393211 CA1P00915 261 aaPredicted RBP8.06□□□□□ -1.12
COL17A1-203ENST00000393211 IGLV2-23P01705 113 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 CEACAM8P31997 349 aaPredicted RBP8.06□□□□□ -1.12
COL17A1-203ENST00000393211 REG1BP48304 166 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 HBBP68871 147 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 GDF5OSQ5U4N7 250 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 ASCL5Q7RTU5 278 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 LINC00305Q7Z4B0 112 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 C5orf17Q8NAS9 161 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 ST6GALNAC6Q969X2 333 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 LINC00479Q96M42 142 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 RPP21Q9H633 154 aaKnown RBP8.06□□□□□ -1.12
COL17A1-203ENST00000393211 KNTC1P50748 2209 aa8.06□□□□□ -1.12
COL17A1-203ENST00000393211 PRR14LQ5THK1 2151 aa8.05□□□□□ -1.12
COL17A1-203ENST00000393211 C2orf70A6NJV1 201 aa8.05□□□□□ -1.12
COL17A1-203ENST00000393211 SIAH2O43255 324 aa8.05□□□□□ -1.12
COL17A1-203ENST00000393211 SLC25A5P05141 298 aaKnown RBP8.05□□□□□ -1.12
COL17A1-203ENST00000393211 OR5AL1P0C617 328 aa8.05□□□□□ -1.12
COL17A1-203ENST00000393211 TMEM200BQ69YZ2 307 aa8.05□□□□□ -1.12
COL17A1-203ENST00000393211 STPG4Q8N801 248 aa8.05□□□□□ -1.12
COL17A1-203ENST00000393211 TEX45Q8NA69 505 aa8.05□□□□□ -1.12
COL17A1-203ENST00000393211 OR2D3Q8NGH3 330 aa8.05□□□□□ -1.12
COL17A1-203ENST00000393211 TMEM70Q9BUB7 260 aa8.05□□□□□ -1.12
COL17A1-203ENST00000393211 TRAV34A0A0B4J273 112 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 TRBV6-1A0A0K0K1D8 114 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 C19orf71A6NCJ1 209 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 C17orf100A8MU93 164 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 E7EUB6 86 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 LTAP01374 205 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 NBEAP1P0C6P0 100 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 SSBP2P81877 361 aaPredicted RBP8.04□□□□□ -1.12
COL17A1-203ENST00000393211 ALKBH2Q6NS38 261 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 EBLN2Q6P2I7 272 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 TMEM108Q6UXF1 575 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 TMEM116Q8NCL8 245 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 WNT10AQ9GZT5 417 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 ST20Q9HBF5 79 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 DYSFO75923 2080 aa8.04□□□□□ -1.12
COL17A1-203ENST00000393211 PPIAL4EA0A075B759 164 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 IGHV1-69-2A0A0G2JMI3 117 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 PGPA6NDG6 321 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 PPIAL4DF5H284 164 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 TNFRSF13BO14836 293 aaPredicted RBP8.03□□□□□ -1.12
COL17A1-203ENST00000393211 NDUFB3O43676 98 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 NDUFB8O95169 186 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 P01737 135 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 PPIAL4FP0DN26 164 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 DEFB109BQ30KR1 87 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 LRRC10Q5BKY1 277 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 RNASEKQ6P5S7 137 aaKnown RBP8.03□□□□□ -1.12
COL17A1-203ENST00000393211 RBPMS2Q6ZRY4 209 aaKnown RBP8.03□□□□□ -1.12
COL17A1-203ENST00000393211 C8orf46Q8TAG6 207 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 TNFRSF14Q92956 283 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 NDFIP1Q9BT67 221 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 ZNRD1Q9P1U0 126 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 PPIAL4AQ9Y536 164 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 A0A1W2PPI3 338 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 C22orf46C9J442 243 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 NPIPB6E9PJ23 425 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 TMEM178BH3BS89 294 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 MOSP00540 346 aa8.03□□□□□ -1.12
COL17A1-203ENST00000393211 GP9P14770 177 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms