RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PAX2Q02962 417 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 TMEM170AQ8WVE7 144 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 TMEM37Q8WXS4 190 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 TP73-AS1Q9UF72 201 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 LSM4Q9Y4Z0 139 aaKnown RBP7.86□□□□□ -1.15
COL6A3-204ENST00000392003 MYOD1P15172 320 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 CCL3L1P16619 93 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 FAM3BP58499 235 aaPredicted RBP7.86□□□□□ -1.15
COL6A3-204ENST00000392003 NIT1Q86X76 327 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 OR4P4Q8NGL7 312 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 VN1R17PQ8TDU5 208 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 FLYWCH2Q96CP2 140 aaKnown RBP7.86□□□□□ -1.15
COL6A3-204ENST00000392003 MRPL20Q9BYC9 149 aaKnown RBP7.86□□□□□ -1.15
COL6A3-204ENST00000392003 TMEM106BQ9NUM4 274 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 BET1LQ9NYM9 111 aa7.86□□□□□ -1.15
COL6A3-204ENST00000392003 TMEM178BH3BS89 294 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 SAA1P0DJI8 122 aaPredicted RBP7.85□□□□□ -1.15
COL6A3-204ENST00000392003 IGFBP2P18065 325 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 EFNB3Q15768 340 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 FAM78BQ5VT40 261 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 AMMECR1LQ6DCA0 310 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 TMEM256Q8N2U0 113 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 OR1L8Q8NGR8 309 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 VSTM2AQ8TAG5 236 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 TNFRSF18Q9Y5U5 241 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 TEX50A0A1B0GTY4 177 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 ZNF207O43670 478 aaKnown RBP7.85□□□□□ -1.15
COL6A3-204ENST00000392003 ACTL6BO94805 426 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 IGKV1-16P04430 117 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 CD99P14209 185 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 Q6ZN92 141 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 PYGO2Q9BRQ0 406 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 ZNF835Q9Y2P0 537 aa7.85□□□□□ -1.15
COL6A3-204ENST00000392003 G3V4G9 280 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 THBDP07204 575 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 NPPCP23582 126 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 IL3RAP26951 378 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 TMEM200BQ69YZ2 307 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 ZNF833PQ6ZTB9 187 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 SMIM20Q8N5G0 67 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 MS4A10Q96PG2 267 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 ZNRD1Q9P1U0 126 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 REG1BP48304 166 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 TAS2R45P59539 299 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 RPL8P62917 257 aaKnown RBP7.84□□□□□ -1.15
COL6A3-204ENST00000392003 C2orf83Q53S99 150 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 NEUROG1Q92886 237 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 RNASE6Q93091 150 aaKnown RBP7.84□□□□□ -1.15
COL6A3-204ENST00000392003 VAMP8Q9BV40 100 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 TMEM167BQ9NRX6 74 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 TECRQ9NZ01 308 aaKnown RBP7.84□□□□□ -1.15
COL6A3-204ENST00000392003 SSUH2Q9Y2M2 353 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 RAI1Q7Z5J4 1906 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-204ENST00000392003 TET2Q6N021 2002 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-204ENST00000392003 USF1P22415 310 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-204ENST00000392003 SUB1P53999 127 aaKnown RBP eCLIP7.84□□□□□ -1.15
COL6A3-204ENST00000392003 OR4C13Q8NGP0 309 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 NABP2Q9BQ15 211 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 DSCAML1Q8TD84 2053 aa7.84□□□□□ -1.15
COL6A3-204ENST00000392003 SCO2A0A1W2PP80 73 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 SRRM4A7MD48 611 aaKnown RBP7.83□□□□□ -1.16
COL6A3-204ENST00000392003 PAFAH1B2P68402 229 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 DERL1Q9BUN8 251 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.83□□□□□ -1.16
COL6A3-204ENST00000392003 PGPEP1LA6NFU8 196 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 H0YJW9 148 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 LCN2P80188 198 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 RHOGP84095 191 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 PSG5Q15238 335 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 VMA21Q3ZAQ7 101 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 SPATA31B1PQ5VZV4 182 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 PDPNQ86YL7 162 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 C19orf24Q9BVV8 132 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 M0QXV9 152 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 CA7P43166 264 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 HNRNPA3P51991 378 aaKnown RBP7.83□□□□□ -1.16
COL6A3-204ENST00000392003 PRR20EP86478 221 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 PRR20CP86479 221 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 PRR20DP86480 221 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 PRR20BP86481 221 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 PRR20AP86496 221 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 LY6DQ14210 128 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 OR10G8Q8NGN5 311 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 JKAMPQ9P055 326 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 FUT9Q9Y231 359 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 WASHC3Q9Y3C0 194 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 LAMA5O15230 3695 aa7.83□□□□□ -1.16
COL6A3-204ENST00000392003 C1QTNF9P0C862 333 aa7.82□□□□□ -1.16
COL6A3-204ENST00000392003 FAM71F2Q6NXP2 309 aa7.82□□□□□ -1.16
COL6A3-204ENST00000392003 TEX43Q6ZNM6 134 aa7.82□□□□□ -1.16
COL6A3-204ENST00000392003 PQLC2Q6ZP29 291 aa7.82□□□□□ -1.16
COL6A3-204ENST00000392003 MIR17HGQ75NE6 70 aa7.82□□□□□ -1.16
COL6A3-204ENST00000392003 C5orf17Q8NAS9 161 aa7.82□□□□□ -1.16
COL6A3-204ENST00000392003 OR5AN1Q8NGI8 311 aa7.82□□□□□ -1.16
COL6A3-204ENST00000392003 OR4A5Q8NH83 315 aa7.82□□□□□ -1.16
COL6A3-204ENST00000392003 ACY3Q96HD9 319 aa7.82□□□□□ -1.16
COL6A3-204ENST00000392003 SRSF8Q9BRL6 282 aaKnown RBP7.82□□□□□ -1.16
COL6A3-204ENST00000392003 ENSAO43768 121 aaKnown RBP7.82□□□□□ -1.16
COL6A3-204ENST00000392003 RNASE2P10153 161 aaKnown RBP7.82□□□□□ -1.16
COL6A3-204ENST00000392003 CD69Q07108 199 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms