RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 ZNRD1Q9P1U0 126 aa11.31□□□□□ -0.6
SDC1-202ENST00000381150 OR51B2Q9Y5P1 312 aa11.31□□□□□ -0.6
SDC1-202ENST00000381150 TTC28Q96AY4 2481 aa11.31□□□□□ -0.6
SDC1-202ENST00000381150 PTPRBP23467 1997 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 H0YJW9 148 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 COX7A2P2O60397 106 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 SLC25A5P05141 298 aaKnown RBP11.3□□□□□ -0.6
SDC1-202ENST00000381150 ZNF134P52741 427 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 INO80CQ6PI98 192 aaPredicted RBP11.3□□□□□ -0.6
SDC1-202ENST00000381150 C12orf54Q6X4T0 127 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 C2orf70A6NJV1 201 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 TMEM238C9JI98 176 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 H3BUT2 72 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 IGKV3-15P01624 115 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 FXYD7P58549 80 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 COX19Q49B96 90 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 C11orf53Q8IXP5 236 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 OR2Z1Q8NG97 314 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 KLF14Q8TD94 323 aaPredicted RBP11.3□□□□□ -0.6
SDC1-202ENST00000381150 C11orf52Q96A22 123 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 DAZAP1Q96EP5 407 aaKnown RBP11.3□□□□□ -0.6
SDC1-202ENST00000381150 TANC2Q9HCD6 1990 aa11.3□□□□□ -0.6
SDC1-202ENST00000381150 SAA2-SAA4A0A096LPE2 208 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 SYS1-DBNDD2H3BUS1 97 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 C9orf106Q8NAJ2 232 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 HES4Q9HCC6 221 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 MORN2Q502X0 79 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 VWA1Q6PCB0 445 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 OR8A1Q8NGG7 326 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 MAP1LC3CQ9BXW4 147 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 ZNF835Q9Y2P0 537 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 LSM4Q9Y4Z0 139 aaKnown RBP11.29□□□□□ -0.6
SDC1-202ENST00000381150 IGKV1OR2-108A0A075B7D4 117 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 A0A1W2PRE2 83 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 SMIM27A0A1W2PRY6 76 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 MMP23AO75900 390 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 C8orf88P0DMB2 117 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 HOXC12P31275 282 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 HSPE1P61604 102 aaKnown RBP11.29□□□□□ -0.6
SDC1-202ENST00000381150 RBMXL3Q8N7X1 1067 aaKnown RBP11.29□□□□□ -0.6
SDC1-202ENST00000381150 ZNF503Q96F45 646 aa11.29□□□□□ -0.6
SDC1-202ENST00000381150 ZNF430Q9H8G1 570 aaPredicted RBP11.29□□□□□ -0.6
SDC1-202ENST00000381150 SPTA1P02549 2419 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 LOC389332A0A1B0GUA5 103 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 GNG7O60262 68 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 PRDX2P32119 198 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 C1orf185Q5T7R7 199 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 ACP7Q6ZNF0 438 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 BPIFA4PQ86YQ2 179 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 TEX45Q8NA69 505 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 IGLV2-8P01709 118 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 HTR1DP28221 377 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 ARF6P62330 175 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 SMIM21Q3B7S5 101 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 OR4S2Q8NH73 311 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 FLYWCH2Q96CP2 140 aaKnown RBP11.28□□□□□ -0.6
SDC1-202ENST00000381150 NAV3Q8IVL0 2385 aa11.28□□□□□ -0.6
SDC1-202ENST00000381150 IGHV1-24A0A0C4DH33 117 aa11.27□□□□□ -0.6
SDC1-202ENST00000381150 FAM231BA6NCW3 169 aa11.27□□□□□ -0.6
SDC1-202ENST00000381150 REG1BP48304 166 aa11.27□□□□□ -0.6
SDC1-202ENST00000381150 FOXE3Q13461 319 aa11.27□□□□□ -0.6
SDC1-202ENST00000381150 BHLHA15Q7RTS1 189 aaPredicted RBP11.27□□□□□ -0.6
SDC1-202ENST00000381150 PAXXQ9BUH6 204 aa11.27□□□□□ -0.6
SDC1-202ENST00000381150 MRPL27Q9P0M9 148 aaKnown RBP11.27□□□□□ -0.6
SDC1-202ENST00000381150 DKK4Q9UBT3 224 aa11.27□□□□□ -0.6
SDC1-202ENST00000381150 SVEP1Q4LDE5 3571 aa11.27□□□□□ -0.6
SDC1-202ENST00000381150 GPR183P32249 361 aa11.27□□□□□ -0.61
SDC1-202ENST00000381150 YLPM1P49750 1951 aaKnown RBP11.27□□□□□ -0.61
SDC1-202ENST00000381150 CHODLQ9H9P2 273 aa11.27□□□□□ -0.61
SDC1-202ENST00000381150 PLSCR4Q9NRQ2 329 aa11.27□□□□□ -0.61
SDC1-202ENST00000381150 PEF1Q9UBV8 284 aaKnown RBP11.27□□□□□ -0.61
SDC1-202ENST00000381150 F11RQ9Y624 299 aaKnown RBP11.27□□□□□ -0.61
SDC1-202ENST00000381150 AKAP6Q13023 2319 aa11.27□□□□□ -0.61
SDC1-202ENST00000381150 PGPA6NDG6 321 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 KLK10O43240 276 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 PPBPP02775 128 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 HIST1H1EP10412 219 aaKnown RBP11.26□□□□□ -0.61
SDC1-202ENST00000381150 TMEM249Q2WGJ8 235 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 TMEM177Q53S58 311 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 IGF2-ASQ6U949 168 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 WDR82Q6UXN9 313 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 WFDC3Q8IUB2 231 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 LY96Q9Y6Y9 160 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 SPTBN1Q01082 2364 aaKnown RBP11.26□□□□□ -0.61
SDC1-202ENST00000381150 TRAV17A0A0B4J275 112 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 CEACAM4O75871 244 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 REG1AP05451 166 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 NHLH1Q02575 133 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 C1orf229Q6ZS94 237 aaPredicted RBP11.26□□□□□ -0.61
SDC1-202ENST00000381150 DEFB125Q8N687 156 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 CD177Q8N6Q3 437 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 C1orf162Q8NEQ5 155 aaPredicted RBP11.26□□□□□ -0.61
SDC1-202ENST00000381150 C15orf61A6NNL5 157 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 PEX7O00628 323 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 ADH4P08319 380 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 PRR20EP86478 221 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 PRR20CP86479 221 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 PRR20DP86480 221 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 PRR20BP86481 221 aa11.26□□□□□ -0.61
SDC1-202ENST00000381150 PRR20AP86496 221 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms