RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 A0A1B0GTI1 187 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 PAX8Q06710 450 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 VMO1Q7Z5L0 202 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 RNF126Q9BV68 326 aa11.38□□□□□ -0.59
COL4A1-201ENST00000375820 IGKCP01834 107 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 MYOD1P15172 320 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 UBE2E2Q96LR5 201 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 RFNGQ9Y644 331 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 IGKV1D-8A0A087WSZ0 117 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 A0A0A6YYD4 124 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 PRTN3P24158 256 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 ZNF497Q6ZNH5 498 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 CYSLTR1Q9Y271 337 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 LINC00587B1AMM8 73 aa11.37□□□□□ -0.59
COL4A1-201ENST00000375820 SRSF6Q13247 344 aaKnown RBP11.37□□□□□ -0.59
COL4A1-201ENST00000375820 FOXG1P55316 489 aaPredicted RBP11.37□□□□□ -0.59
COL4A1-201ENST00000375820 KLF17Q5JT82 389 aaPredicted RBP11.37□□□□□ -0.59
COL4A1-201ENST00000375820 NR2C2APQ86WQ0 139 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 RNASE6Q93091 150 aaKnown RBP11.36□□□□□ -0.59
COL4A1-201ENST00000375820 ZNF48Q96MX3 618 aaPredicted RBP11.36□□□□□ -0.59
COL4A1-201ENST00000375820 ZNF319Q9P2F9 582 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 TRBV6-7A0A0A0MS04 114 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 PMS2P5A8MQ11 134 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 EFNB3Q15768 340 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 TMEM249Q2WGJ8 235 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 TMEM144Q7Z5S9 345 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 SLC25A2Q9BXI2 301 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 CARHSP1Q9Y2V2 147 aaKnown RBP11.36□□□□□ -0.59
COL4A1-201ENST00000375820 ANAPC13Q9BS18 74 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 SCRT1Q9BWW7 348 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 TCRAP04437 139 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 ACTL10Q5JWF8 245 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 LCNL1Q6ZST4 164 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 IGKV1-9A0A0C4DH69 117 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 CEACAM1P13688 526 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 CCL1P22362 96 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 CACNG8Q8WXS5 425 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 C5orf30Q96GV9 206 aa11.36□□□□□ -0.59
COL4A1-201ENST00000375820 RCHY1Q96PM5 261 aa11.35□□□□□ -0.59
COL4A1-201ENST00000375820 TRGV1A0A0A0MS02 117 aa11.35□□□□□ -0.59
COL4A1-201ENST00000375820 MCRIP2Q9BUT9 160 aaKnown RBP11.35□□□□□ -0.59
COL4A1-201ENST00000375820 RPUSD1Q9UJJ7 312 aaKnown RBP11.35□□□□□ -0.59
COL4A1-201ENST00000375820 ATP5IP56385 69 aaPredicted RBP11.35□□□□□ -0.59
COL4A1-201ENST00000375820 ZNF329Q86UD4 541 aa11.35□□□□□ -0.59
COL4A1-201ENST00000375820 Q8TAT8 98 aa11.35□□□□□ -0.59
COL4A1-201ENST00000375820 GGTLC3B5MD39 225 aa11.35□□□□□ -0.59
COL4A1-201ENST00000375820 PAX4O43316 350 aa11.35□□□□□ -0.59
COL4A1-201ENST00000375820 PSCAO43653 123 aa11.35□□□□□ -0.59
COL4A1-201ENST00000375820 IGHV1-46P01743 117 aa11.35□□□□□ -0.59
COL4A1-201ENST00000375820 M0R2P5 195 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 YPEL1O60688 119 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 MTURNQ8N3F0 131 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 YPEL2Q96QA6 119 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 JPT2Q9H910 190 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 J3QW42 95 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 WNT2P09544 360 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 C15orf32Q32M92 178 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 Q6AWC8 147 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 LY6HO94772 140 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 LINC00205P59089 165 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 SLC50A1Q9BRV3 221 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 PVRIGQ6DKI7 326 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 A0A087WX48 190 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 IGFBP3P17936 291 aaPredicted RBP11.34□□□□□ -0.59
COL4A1-201ENST00000375820 TIMP3P35625 211 aa11.34□□□□□ -0.59
COL4A1-201ENST00000375820 SLC25A39Q9BZJ4 359 aaPredicted RBP11.34□□□□□ -0.59
COL4A1-201ENST00000375820 TRAV41A0A0B4J266 112 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 FCN3O75636 299 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 TMEM170AQ8WVE7 144 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 D6R8Y8 96 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 INS-IGF2F8WCM5 200 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 INSP01308 110 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 PAQR4Q8N4S7 273 aaPredicted RBP11.33□□□□□ -0.6
COL4A1-201ENST00000375820 LAMTOR3Q9UHA4 124 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 TRAV3A0A0B4J244 114 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 ZNF876PQ49A33 203 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 ATP5L2Q7Z4Y8 100 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 VWCEQ96DN2 955 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 SIPA1L3O60292 1781 aaPredicted RBP11.33□□□□□ -0.6
COL4A1-201ENST00000375820 SPACA3Q8IXA5 215 aa11.33□□□□□ -0.6
COL4A1-201ENST00000375820 A0A1B0GW15 77 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 CDK2AP2O75956 126 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 DUSP14O95147 198 aaKnown RBP11.32□□□□□ -0.6
COL4A1-201ENST00000375820 HGFACQ04756 655 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 BTCP35070 178 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 BMPERQ8N8U9 685 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 H0YIZ8 118 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 SMKR1H3BMG3 65 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 PLNP26678 52 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 DUTP33316 252 aaKnown RBP11.32□□□□□ -0.6
COL4A1-201ENST00000375820 TRGV11A0A075B6L2 103 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 IGHV2-26A0A0B4J1V2 119 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 TMEM200BQ69YZ2 307 aa11.32□□□□□ -0.6
COL4A1-201ENST00000375820 RTTNQ86VV8 2226 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 hDV102S1A0JD36 115 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 MAPK1IP1LQ8NDC0 245 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 GNLYP22749 145 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 CFHR3Q02985 330 aa11.31□□□□□ -0.6
COL4A1-201ENST00000375820 MRPL14Q6P1L8 145 aaKnown RBP11.31□□□□□ -0.6
COL4A1-201ENST00000375820 IFI27L1Q96BM0 104 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms